Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7711 104 2e-17 seq95098 89.7 4e-13 seq67990 84.2 2e-11 >seq7711 Length=5731 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||| |||||||| |||| || || ||||||||| |||| ||| | | Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||| ||||||||| | || |||| ||||| ||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| Sbjct 251 ATTCAAAAAGAGTCTAC 267 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || || ||||| ||||| | || |||| Sbjct 299 ATGCAGATCTTTGTTAAGACCCTGACAGGGAAAACAATTACTTTGGAGGTGGAGAGCTCT 358 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 359 GATACGATTGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCACCGGATCAG 418 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| ||| || || ||||||||||||| || || | ||||||||||| Sbjct 419 CAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTTGCGGATTACAAT 478 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| || ||||| || | ||| ||||||| Sbjct 479 ATTCAGAAGGAATCAACTCTTCACCTGGTGTT 510 >seq95098 Length=1037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| ||||| | || |||||||||||| || || | ||| || ||||| || || Sbjct 981 GACAAGGAAGGGATTCCTCCGGATCAACAAAGGCTGATCTTTGCCGGAAAACAACTCGAA 922 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | | || |||||||||||||||||||||| ||||| || | ||| | ||| | Sbjct 921 GATGGCCGTACTTTGGCGGATTACAACATTCAAAAGGAATCAACCCTCCACCTTGTGCTC 862 Query 110486 AGACTGCGAGGGGG 110499 || || || || || Sbjct 861 AGGCTTCGCGGAGG 848 >seq67990 Length=6038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 |||||| || ||| | |||| ||| |||||||| |||| |||| | |||| | || || Sbjct 4465 GGATCAGCAGAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGCCGAACTCTTGCAGA 4524 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||| || || ||| | ||| |||| |||| || | || |||| Sbjct 4525 TTACAACATTCAAAAGGAGTCAACGCTTCACTTGGTCCTAAGGCTCAGGGGAGGAA 4580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412206915644006