Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq90076 172 9e-37 seq51752 172 9e-37 seq7277 91.5 2e-12 >seq90076 Length=2428 Score = 172 bits (190), Expect = 9e-37 Identities = 209/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || |||||||| || || || || || |||||||| || Sbjct 1950 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 1891 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| || ||| | | || ||||| || || || || ||| || Sbjct 1890 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTC---- 1835 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | | ||||||| |||||||| || | |||||||| ||||||||| Sbjct 1834 --GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 1777 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || |||||||||| ||| || | | ||| |||| |||||| |||| ||| || ||||| Sbjct 1776 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTAC 1717 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||| ||||| ||||| ||||||||||||||||| ||| Sbjct 1716 ATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAG 1672 Score = 134 bits (148), Expect = 2e-25 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| |||||||| || |||||||| | | |||| || || || |||||||| Sbjct 1666 GGCCTCGGCGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCC 1607 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||||||| | || ||||| |||||| | | || Sbjct 1606 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAG 1547 Query 796269 CGAGACCCAGTGGACCGTG--TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 |||||| ||| | | | ||| | | |||||| ||||| || |||||||| || Sbjct 1546 GCTTTCCCAGT-GACGGAGATCCTGCGAC-AAGTCGACTTCCTCCGCCGTCCAAAACGAT 1489 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| || |||||||||||||| || | |||| | || || |||| Sbjct 1488 GCCTCGGCTTTCTTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACA 1437 >seq51752 Length=12828 Score = 172 bits (190), Expect = 9e-37 Identities = 209/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || |||||||| || || || || || |||||||| || Sbjct 442 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 383 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| || ||| | | || ||||| || || || || ||| || Sbjct 382 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTC---- 327 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | | ||||||| |||||||| || | |||||||| ||||||||| Sbjct 326 --GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 269 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || |||||||||| ||| || | | ||| |||| |||||| |||| ||| || ||||| Sbjct 268 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTAC 209 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||| ||||| ||||| ||||||||||||||||| ||| Sbjct 208 ATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAG 164 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| |||||||| || |||||||| | | |||| || || || |||||||| Sbjct 158 GGCCTCGGCGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCC 99 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 |||| ||||||||| |||||||||||||| | || ||||| |||||| Sbjct 98 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTC 48 Score = 91.5 bits (100), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| ||| || || || | | ||| || || || || || |||| ||||| ||| Sbjct 796 GCCTTCTGATATTCCCCTACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGAAGCGAAATC 737 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCA 794018 | ||||||||| |||||| || ||| ||| |||| |||||||||||| | Sbjct 736 AGCTCCATCCAATCGAACGGATTAGCCACTCCGTACACCTTCCCGCACCCGAGCGCTCCC 677 Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078 | ||| | ||| || || || || || ||||| | ||| | || ||||||| || | Sbjct 676 AACAGCCTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACC 617 Query 794079 AGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | ||| ||| ||||||| |||| |||||||| |||| || || || || || Sbjct 616 AACGCACAC-GGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTC 564 >seq7277 Length=4024 Score = 91.5 bits (100), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||||||||| ||||| || ||||||||| | |||||||| ||| ||| | Sbjct 211 ACTTGGTCACGGCCTTGGTTCCCTCCGAAACGGCGTGCTTCGCCAGTTCACCGGGCAATA 152 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 || | |||||||||||||||||| || Sbjct 151 CTAGCCTCACGGCGGTCTGGATCTCCCG 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7902828100126338