Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq119983 86.0 5e-12 seq55405 86.0 5e-12 seq7711 86.0 5e-12 seq67990 84.2 2e-11 >seq119983 Length=969 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||||| ||||| || || || ||| | || |||| | Sbjct 187 ATGCAGATATTTGTTAAGACTTTGACAGGAAAGACGATCACCTTGGAGGTGGAGAGTTCT 246 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || |||||||| | || |||||| Sbjct 247 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAAGGGATTCCACCAGATCAG 306 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || ||||| ||||||||||| | | || | || ||||| ||| Sbjct 307 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACCCTTGCTGACTATAAC 366 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 367 ATTCAGAAGGAGTCCAC 383 >seq55405 Length=4719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||| | || || || || |||||| | ||| ||| | Sbjct 2962 ATGCAAATCTTTGTCAAGACTCTTACTGGGAAGACTATTACCTTGGAAGTTGAGAGTTCA 2903 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| |||||| || || |||||| | || |||||| Sbjct 2902 GATACCATTGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCAGATCAG 2843 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||| ||||| || || | | || | || |||||||| Sbjct 2842 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTTGCTGACTACAAT 2783 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2782 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 2753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 107639 AAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAA 107698 ||||||| |||||||| ||| | || ||||||||||| | |||| ||| || || Sbjct 2651 AAAGATTCAAGATAAAGAGGGCATTCCACCAGATCAGCAGAGGTTGATTTTTGCAGGCAA 2592 Query 107699 ACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || || | | || | || || || ||||| |||||||| || || |||| Sbjct 2591 GCAGCTTGAAGATGGGAGGACCCTTGCAGATTATAACATCCAAAAGGAATCCACACTGCA 2532 Query 107759 CATGGTGTTGAGATTGCGAGGGGGAA 107784 | ||||| ||||| |||| || |||| Sbjct 2531 CTTGGTGCTGAGACTGCGCGGAGGAA 2506 >seq7711 Length=5731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| ||||||| || ||||||||| |||| ||| | | Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || ||||| || || ||||| | || ||||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||| ||||||| | || |||| || || ||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||| |||||||| Sbjct 251 ATTCAAAAAGAGTCTAC 267 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | ||||| ||||| ||||| | || |||| ||| Sbjct 299 ATGCAGATCTTTGTTAAGACCCTGACAGGGAAAACAATTACTTTGGAGGTGGAGAGCTCT 358 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 359 -GATACGATTGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCACCGGATCA 417 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| ||| || || ||||||||||| | | || | ||||| ||||| Sbjct 418 GCAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTTGCGGATTACAA 477 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| ||||| || || | ||| |||||||| Sbjct 478 TATTCAGAAGGAATCAACTCTTCACCTGGTGTTG 511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||||| ||||| || || || ||| | || |||| | Sbjct 527 ATGCAGATATTTGTTAAGACTTTGACAGGAAAGACGATCACCTTGGAGGTGGAGAGTTCT 586 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || |||||||| | || |||||| Sbjct 587 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAAGGGATTCCACCAGATCAG 646 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || ||||| ||||||||||| | | || | || ||||| ||| Sbjct 647 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACCCTTGCTGACTATAAC 706 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 707 ATTCAGAAGGAGTCCAC 723 >seq67990 Length=6038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||||||||||||| | |||| ||| |||||||| |||| || | | ||| | || || Sbjct 4465 GGATCAGCAGAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGCCGAACTCTTGCAGA 4524 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||||||||||||||| ||| | ||| |||| Sbjct 4525 TTACAACATTCAAAAGGAGTCAACGCTTCACTTGGT 4560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398263584507838