Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq126096 98.7 4e-16 seq94439 91.5 5e-14 >seq126096 Length=766 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 70 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 129 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 130 CTGCTCTACCCCGC 143 >seq94439 Length=2864 Score = 91.5 bits (100), Expect = 5e-14 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 50110 GTTGCGG-AGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGA 50168 ||||||| || ||||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 1936 GTTGCGGNAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAA 1995 Query 50169 ACTGCTCTACTCCGC 50183 |||||||||| |||| Sbjct 1996 ACTGCTCTACCCCGC 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181331169983604