Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9706 116 4e-21 seq7293 114 1e-20 seq87541 109 5e-19 seq35332 105 6e-18 seq4456 102 8e-17 seq7711 96.9 3e-15 seq106908 95.1 1e-14 seq55405 91.5 1e-13 seq93401 86.0 6e-12 >seq9706 Length=10732 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| |||||||||||| ||| || |||||||||||||||||| Sbjct 1017 GTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGCTTGCCG 1076 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 1077 GCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTC 1136 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | |||||| || | || | ||| || || || || ||| Sbjct 1137 ACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTT 1196 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1197 TTCACGAAGATCTGCAT 1213 >seq7293 Length=4729 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||||||| ||| || ||| ||||||||||||||| | Sbjct 4445 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAAGT--ACGGCCGTCCTCGAGCTGCTTTC 4388 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||||| || || || || |||||||| ||||| || Sbjct 4387 CGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCT 4328 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| | ||| || |||| |||| || |||||||||| || Sbjct 4327 TGACGTTATCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCGGTCAAAG 4268 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 4267 TTTTCACGAAGATCTGCAT 4249 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| | | || | | | || || | Sbjct 4682 AAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCA-TCTTCCAA 4624 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | || ||||||||| || || || ||||||||||| || Sbjct 4623 CTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGAAT 4564 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| ||| || || | |||| ||| ||||| Sbjct 4563 CTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAACCTCAAGAGTGATGGTCTTGCC 4504 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || ||||| |||||||| Sbjct 4503 GGTCAGAGTCTTAACGAAGATCTGCAT 4477 >seq87541 Length=1860 Score = 109 bits (120), Expect = 5e-19 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| | | || ||||||||||||||| || Sbjct 17 GGTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGCTGCTTCCC 76 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 77 AGCGAAGATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGTCTT 136 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG- 133641 || | |||| || || | | ||| || || | ||| | ||| || || || || | Sbjct 137 GACATTGTCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGN 196 Query 133642 -TTTTTACGAAAATCTGCATGG 133662 |||| ||||| |||||||||| Sbjct 197 NTTTTCACGAAGATCTGCATGG 218 >seq35332 Length=499 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| |||||||||||| ||| || | | | || || | | Sbjct 221 ATGGAGGGTGGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGGCCA-TCTTCCAATT 163 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | | ||||| || ||||| || || |||||||| ||||| Sbjct 162 GCTTTCCTGCAAAGATCAATCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCT 103 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| |||||||| ||| || |||| |||| ||| ||||||| Sbjct 102 TGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACTTCGAGAGTGATGGTCTTGCCGG 43 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 42 TTAGGGTTTTGACGAAGATCTGCAT 18 >seq4456 Length=3005 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| || || ||||| |||||||||||| ||| || | ||| || || || Sbjct 2886 ATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTG 2827 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | |||||||| || ||||| || || || ||||| |||||| Sbjct 2826 CTTTCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTT 2767 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | ||| |||| ||| || || | || | ||| |||||||| Sbjct 2766 GGCCTTGACGTTGTCGATCGTATCGGAACTCTCGACTTCAAGAGTTATGGTCTTGCCGGT 2707 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||||||| Sbjct 2706 TAGGGTTTTCACGAAGATCTGCAT 2683 >seq7711 Length=5731 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| |||||||| || || || ||||| ||| ||| ||| | ||||| | || Sbjct 274 ATGAAGGGTAGACTCTTTTTGAATGTTATAATCTGCCAAGGTGCGACCA-TCCTCCAACT 216 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || | ||| || || || ||||| ||||||||||| ||||| Sbjct 215 GCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCT 156 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||||| ||| || |||| ||| | ||| || || | Sbjct 155 TGGCCTTCACGTTATCAATAGTGTCGGAACTCTCGACCTCGAGGGTAATGGTCTTCCCTG 96 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| || ||||| Sbjct 95 TTAGGGTTTTGACGAATATTTGCAT 71 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| ||||||||||| | | || | ||||| |||||||| || Sbjct 495 GTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCCTCCAGCTGCTTTCCA 436 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | |||||||| || || || || ||||||||||| ||| || |||| Sbjct 435 GCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTC-CTGAATCTTGGCTTT 377 Query 133584 AGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | | |||| ||| || | | |||||| || | || | ||||| || ||||| || Sbjct 376 AACGTTGTCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATTGTTTTCCCTGTCAGGGT 317 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 316 CTTAACAAAGATCTGCAT 299 >seq106908 Length=1159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCCC 133523 |||| || ||||| |||||||||||| ||| || | | | || || | ||||| || Sbjct 1 TGGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGGCCA-TCTTCCAATTGCTTTCCT 59 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | ||||| || ||||| || || |||||||| |||||| |||| Sbjct 60 GCAAAGATCAATCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 119 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG-TCAGAGT 133642 | | |||| |||||||| ||| || |||| |||| ||| ||||||| | || || Sbjct 120 ACGTTGTCAATCGTGTCGGAACTCTCAACTTCGAGAGTGATGGTCTTGCCGGNTTAGGGT 179 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 180 TTTGACGAAGATCTGCAT 197 >seq55405 Length=4719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| |||||||| || | | || || || ||| Sbjct 2757 AAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTTCCATCTTCAAGC 2816 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | ||||||| |||||| || |||||||||||||||||||| |||| Sbjct 2817 TGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGGATC 2876 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||| | | | |||| || || | ||| || || | ||| | || || || Sbjct 2877 -TTTGCTTTAACATTATCAATGGTATCTGAACTCTCAACTTCCAAGGTAATAGTCTTCCC 2935 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || ||||| Sbjct 2936 AGTAAGAGTCTTGACAAAGATTTGCAT 2962 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || ||||||||||| ||| ||| | ||||| || ||||| || Sbjct 2310 GTAGACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTGCTTACCA 2369 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | || | || |||||| || || || || ||||||||||| ||| ||| | ||| Sbjct 2370 GCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTC-CTGAATTTTAGCCTT 2428 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||| || || | ||||| ||||| || |||| || Sbjct 2429 CACATTATCAACAGTGTCCGAACCCTCAACCTCCAGGGTGATAGTTTTTCCAGTCAAGGT 2488 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 2489 CTTAACAAAAATCTGCAT 2506 >seq93401 Length=1125 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/212 (72%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 133457 ATGTATGGT-GGACTCTTTCTG-TATATTGTAATCGC-CCATCGTGGACGA--GTCCTCG 133511 ||| | ||| ||| || ||||| ||||||||||||| ||| || ||| ||| ||| Sbjct 875 ATGAAGGGTNGGATTCCTTCTGGTATATTGTAATCGGGCCAAAGT--ACGGCCGTCTTCG 818 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCT-GCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||||||||||| || | || |||| | |||| || ||||| || || |||||||| Sbjct 817 AGCTGCTTGCCTGCAAAGATCAGCCTTTNGCTGATCCGGAGGAATCCCCTCCTTGTCCTG 758 Query 133571 GATCTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC-GGTT 133628 |||||| ||| || | || | ||| |||| || || |||| || | ||| Sbjct 757 GATCTTGGCCTTNGACGTTGTCGATCGTATCGGAACTTTCGACTTCGAGAGTAANTGGTC 698 Query 133629 TTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || ||||| ||||| |||||||| Sbjct 697 TTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482658554168080