Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq83303 86.0 1e-11 >seq83303 Length=13250 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 279899 AAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTA 279958 ||||| | ||| | | |||||| ||||| || | || ||| ||||||||||| Sbjct 5234 AAGATCCTTTTCTGCTCTTTCAAGAGAAATTTTATCAAAGAAGCAAAAGTTGCTCAGTTT 5293 Query 279959 GCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTG 280016 | || |||||||| || ||| | | ||| ||||| ||||| | |||| || || Sbjct 5294 TCTGGCTATGTTTCCGAGCATTCTGCTTACCATCATGGTGAGCAAAGTCTTGCCA--GTA 5351 Query 280017 CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAA 280076 | || ||||| | || || |||||| ||| |||||| | || | ||| ||| | Sbjct 5352 CCATCATAGGTATGGCACAGGATTTTGTGGGCAGCAACAACATTAACTTTCTTCAACCTA 5411 Query 280077 ATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACATAC 280136 |||| ||||||||| | |||| || || |||||| || ||||| | |||||| Sbjct 5412 ATGGCCAATTTGGTACACGTAACCAGGGAGGCAAAGATGCTGCAAGTGCCAGATACATAT 5471 Query 280137 ATACATGTCTTTCAGATATTACA 280159 |||| | || || ||||||| Sbjct 5472 ATACTCGGCTGTCTCCTATTACA 5494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184894679828462