Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq90076 275 9e-68 seq51752 237 2e-56 >seq90076 Length=2428 Score = 275 bits (304), Expect = 9e-68 Identities = 392/543 (72%), Gaps = 14/543 (3%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 || ||| |||| || | |||| || || | |||| || || ||||| |||||| | Sbjct 1418 AATCCGGACCGGTTCTGCATGTTTCCGATTCAGTACCCGCAAATCTGGGAGATGTACAAG 1477 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA--CACGGTC 1455851 |||| ||||||| || |||||||| || ||||| |||||| | | ||| | | | ||| Sbjct 1478 AAAG-CCGAGGCATCGTTTTGGACGGCGGAGGAAGTCGACTT-GTCGCAGGATCTCCGTC 1535 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 |||||| || | | |||||| || ||||| | |||||||||||||| || Sbjct 1536 -ACTGGGAAAGCCTTACCTCTGACGAGAAACACTTCATTACTCACGTCCTCGCCTTCTT- 1593 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 ||||||| ||| |||||||| ||| || || |||| | | || |||||||| ||||| Sbjct 1594 CGCCGCCTCCGACGGCATCGTTCTCGAAAATCTCGCCGCCAGGTTCATGAAAGAAGTCCA 1653 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | | ||||| || || || || ||||||||||| ||||| ||||| ||||| || Sbjct 1654 AGTCGCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCAATCGAGAACATTCACTCCGA 1713 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 || ||||| || || |||| |||||| |||| ||| | | || ||| |||||||||| Sbjct 1714 AATGTACTCCCTTCTCCTCGAAACCTACATCAAAGACTCCGAAGAAAAGAACCACCTCTT 1773 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 ||||||||||| |||||||||| || ||||||||| | ||||| | | ||||| Sbjct 1774 CCGCGCCATCGAAACGGTGCCGTGCGTCGCCAAAAAGGCCAAGTGGGCCCTCGATTGGAT 1833 Query 1456152 CAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGG 1456209 | || ||| ||| || || || ||||| || | | ||| || |||| || || Sbjct 1834 C------GACGGCTCCGAGACATTCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGG 1887 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 || || |||||||| || || ||||| || |||||||| || |||||||| | ||||| Sbjct 1888 AATATTCTTCTCGGGAAGCTTTTGCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCC 1947 Query 1456270 CGG 1456272 || Sbjct 1948 GGG 1950 >seq51752 Length=12828 Score = 237 bits (262), Expect = 2e-56 Identities = 296/402 (74%), Gaps = 9/402 (2%) Strand=Plus/Plus Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 |||||| || ||||| | |||||||||||||| || ||||||| ||| |||||||| Sbjct 48 GACGAGAAACACTTCATTACTCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGT 106 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||| || || |||| | | || |||||||| |||||| | | ||||| || || Sbjct 107 TCTCGAAAATCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCGCCGAGGCCCGCGCCTT 166 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 || || ||||||||||| ||||| ||||| ||||| |||| ||||| || || |||| Sbjct 167 CTATGGCTTCCAGATCGCAATCGAGAACATTCACTCCGAAATGTACTCCCTTCTCCTCGA 226 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 |||||| |||| ||| | | || ||| |||||||||| ||||||||||| |||||||| Sbjct 227 AACCTACATCAAAGACTCCGAAGAAAAGAACCACCTCTTCCGCGCCATCGAAACGGTGCC 286 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 || || ||||||||| | ||||| | | |||||| || ||| ||| || Sbjct 287 GTGCGTCGCCAAAAAGGCCAAGTGGGCCCTCGATTGGATC------GACGGCTCCGAGAC 340 Query 1456173 -TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 || || ||||| || | | ||| || |||| || || || || |||||||| || || Sbjct 341 ATTCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTT 400 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| || |||||||| || |||||||| | ||||| || Sbjct 401 TTGCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGG 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7165644572251004