Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq47021 129 8e-25 seq90076 116 5e-21 seq47681 116 5e-21 seq51752 95.1 2e-14 seq84074 86.0 9e-12 >seq47021 Length=9578 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | |||||| | |||| | |||| |||||| || | ||| ||| Sbjct 3276 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCCA 3335 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| | ||||||||||| |||| || |||||| ||| || Sbjct 3336 TTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGAG 3395 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 3396 ACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 3455 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || ||||| ||| ||||| Sbjct 3456 CCTTCGATACTATCTTCTTTCATG 3479 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||||||| |||| || ||| ||||||||||| | | || |||||||| ||||| Sbjct 1274 ACTCTACGACTGTAGATGTTAGAAGTATATGGTTCAAAGCACTCGTTATTTCCAAGAATC 1333 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTT 68856 || ||||| |||||||||||||||||||| | | |||||| | |||| | || Sbjct 1334 TGGCTGGTTGAGGCAGTTGGCATAGGTGCCACAAGAAGTGAATTTCTCACTCCAT-TCTT 1392 Query 68857 ATGATTT--TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAA 68914 |||| | || | | ||| | ||| ||||| |||| || || |||||||| | Sbjct 1393 -TGATATCATAGCCCTAAGAGCTCCCCAGTCCCACCGATCTGAAGGAGTTACATTCCACA 1451 Query 68915 GATCGTATTGTAGAATTCC 68933 || ||| |||||||| Sbjct 1452 TGTCAGGTTGGAGAATTCC 1470 >seq90076 Length=2428 Score = 116 bits (128), Expect = 5e-21 Identities = 377/581 (65%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || || || ||||| |||| ||||| ||||| || || || Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 | ||| ||||||| || |||||||| ||||||||||| || ||||||| ||| || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 1895 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG--TAACTTGTATCATTA 39790 ||| || ||||| || || || |||| |||| ||| || | || | | | Sbjct 1894 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGC--CG 1837 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| | | ||||| | || || || || || |||| ||||| || || Sbjct 1836 TCGATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 1777 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 ||||| | | ||||| || ||||| | || || || | | || ||| Sbjct 1776 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTAC 1717 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 ||||| || || ||||| || || || ||||| || || || || | || || | Sbjct 1716 ATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCG 1657 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | ||| || ||| || || | || | |||||| || || || || ||| Sbjct 1656 ACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCG 1597 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAG 40090 || || || || | || || |||| || | ||| || || | || | | | |||| Sbjct 1596 GCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAG 1537 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 | | || ||| | || | || ||||| || || ||||||||||| ||||| || || Sbjct 1536 TGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTC 1477 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 |||||||| | ||| || | | || || || ||||| || Sbjct 1476 TTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACAT 1436 >seq47681 Length=10123 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | ||||||| ||| | || | |||||| |||| ||| ||| Sbjct 5060 CCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCCA 5119 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | |||||||||||| ||||||||| ||| |||| ||||| || || || Sbjct 5120 TTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGAG 5179 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 5180 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATATT 5239 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 5240 CCTTCAATACTATCATCTTTCATG 5263 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | || |||||||| || ||||||||| || ||| | || || | Sbjct 5431 GTTCCAGCATTAAAAAGCGTTGGAGATGCATGTGTGAACCATCGTTGAGACATCATATGG 5490 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || ||||| || ||||| || | || || | ||||||| Sbjct 5491 TATGTTTTGATGGCAGAATCAATATCATCCTTGTGAATCCCAACAGCAACTCTCATCAAC 5550 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| ||||| | ||| || ||| | | ||||| ||||| || | || ||| Sbjct 5551 ATATGTTGAGGCCTTTCCACAACTTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCAAGA 5610 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 5611 GTTTTGAAGCCAAAATA 5627 >seq51752 Length=12828 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || || || ||||| |||| ||||| ||||| || || || Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 | ||| ||||||| || |||||||| ||||||||||| || ||||||| ||| || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 387 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||| || ||||| || || || |||| |||| ||| Sbjct 386 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTC 348 >seq84074 Length=6830 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||||||| ||||| |||||||||||| || | || || |||||||| | Sbjct 3447 GCAAGCAAAGTCACAGTGTAGTCCCTCATCTCTAGATATAAGCTCATTTGAAAATGTCAA 3388 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 |||||||||| ||| | |||||| ||||| ||||| ||| Sbjct 3387 CCCAGGCATTAAACCCCTCTTTTTAAGCCAGAATATAGCA 3348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685825699376880