Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4456 100 2e-16 seq9706 86.0 5e-12 seq87541 84.2 2e-11 >seq4456 Length=3005 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||| ||| || | ||| ||||||| || || || ||| Sbjct 2879 GTTGATTCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTGCTTTCCG 2820 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||| |||||||| || | |||||||| || ||||||| || Sbjct 2819 GCGAAGATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTG 2760 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || ||||| |||||||| | ||||| || || ||| Sbjct 2759 ACGTTGTCGATCGTATCGGAACTCTCGACTTCAAGAGTTATGGTCTTGCCGGTTAGGGTT 2700 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| ||||| |||||| Sbjct 2699 TTCACGAAGATCTGCATA 2682 >seq9706 Length=10732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||| ||| || | || |||| |||||||| || ||| Sbjct 1017 GTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGCTTGCCG 1076 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| || || ||||| ||| Sbjct 1077 GCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTC 1136 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || |||| || || | || ||||| || ||| Sbjct 1137 ACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTT 1196 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1197 TTCACGAAGATCTGCAT 1213 >seq87541 Length=1860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | | |||| |||||||| || || Sbjct 18 GTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGCTGCTTCCCA 77 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||||||||| ||||| || | || || || || ||||||| | || Sbjct 78 GCGAAGATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTG 137 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG-- 27228 | | || | || || | | ||||| |||| ||||| | || ||||| || | Sbjct 138 ACATTGTCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGNN 197 Query 27229 TTTTCACAAAGATTTGCATAGCTGC 27253 ||||||| ||||| ||||| | ||| Sbjct 198 TTTTCACGAAGATCTGCATGGTTGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424281124709904