Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq47021 113 6e-20 seq28723 102 1e-16 seq2715 91.5 2e-13 >seq47021 Length=9578 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||||||||| || || ||||| ||||| || || || | ||| || ||||| | ||| Sbjct 3597 CTGCGGTCTCGGAGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTG 3656 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||||| | | |||||| | | |||||||||| || ||| ||| || || || || Sbjct 3657 GGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGC 3716 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||| || |||||| | | || | || || || | || | Sbjct 3717 AACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTCCCTT-GAACCTTTAAGAGGT 3775 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||||||||| | ||||||||| || | ||| | ||||| Sbjct 3776 AAGACCTCTCAAGGGTTTTAAAGCCAAAGTAATCATAGTCAAAATCCCG 3824 >seq28723 Length=7348 Score = 102 bits (112), Expect = 1e-16 Identities = 191/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||||||| || ||||| ||||||||| || Sbjct 2933 AAAACCATCCATTTCAGTCAAAAGCTGATTAATTGTCTGCTCTCTTTCATCATTTCCT-- 2990 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 2991 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 3050 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 |||||| ||| || | ||||| | ||| | || ||| ||||| |||||| Sbjct 3051 CATGGTGCCTTTGATTTCGCCTTCTCAAACAAATCCCTCACTCTTGATGCACCAACACCA 3110 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||| ||| ||||| | || || | || || ||||| || | ||| || Sbjct 3111 ACAAACAACTCAACAAATTCTGATGCCGCACAAGAGAAAAATGGCACGCCGGCTTCTCCA 3170 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | |||| || | | |||||| || || |||||| Sbjct 3171 GCAACTGCTCTAGCCAATAAGGTCTTCCCAGTTCCTGGC 3209 >seq2715 Length=12174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 314/487 (64%), Gaps = 2/487 (0%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 || ||||| ||||| | | | ||| |||||| || || | | ||||| || ||| Sbjct 2243 TCGAAACGTCCCGGCCTCAATAAGGCAGAATCAAGTATGTCTGCCCTGTTAGTTGCTGCA 2184 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | || ||||| | | || || |||||||| || || | | || |||| Sbjct 2183 ATCACAATGATACCAGTGTTACCCTCGAAACCATCCATTTCTGTCAAAAGCTGGTTAAGC 2124 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 ||||| ||||| |||||||| || | | |||| | | ||| || || ||| Sbjct 2123 GTTTGCTCTCTTTCATCATTCCCTCCCCCAATGCCAGTTCCTCTTTGTCGTCCAACAGCA 2064 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || ||||| || || ||| || ||| | | || ||||| Sbjct 2063 TCAATTTCATCAACAAACACAATGCAAGGAGCATTCTCCTTGGCCTTCTTGAACAGATCT 2004 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG 11752 || || | ||||| ||||||||||||||||| ||||| | | | || | Sbjct 2003 CGGACTCGAGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGATATAGAG 1944 Query 11753 ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCT 11812 | ||||| || | ||| || || || || ||| || || |||||||| || ||| Sbjct 1943 AAAAATGGAACTCCAGCTTCCCCAGCAATTGCCTTGGCTAGAAGAGTCTTTCCAGTTCCT 1884 Query 11813 GGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACTTCCAAAATATCTCTC 11871 || ||| | ||||| ||||| || || || || || | | ||||||| Sbjct 1883 GGAGGACCAACAAGAAGAACGCCTTTAGGAATGCGAGCTCCGACAGCTGTGA-ATCTCTC 1825 Query 11872 GGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTC 11931 || | |||||| || ||||| | ||| | || | ||| || |||||| || | Sbjct 1824 TGGCTTCTTGAGGAACTCCACCACCTCCATGAAATCTTGTTTAGCTTCGTCAACTCCTGC 1765 Query 11932 AACATCA 11938 ||||||| Sbjct 1764 AACATCA 1758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627041734843200