Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2715 120 4e-22 seq47021 100 3e-16 seq28723 95.1 1e-14 seq90076 89.7 6e-13 seq51752 89.7 6e-13 seq47681 82.4 9e-11 >seq2715 Length=12174 Score = 120 bits (132), Expect = 4e-22 Identities = 232/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | || || Sbjct 2214 ATCAAGTATGTCTGCCCTGTTAGTTGCTGCAATCACAATGATACCAGTGTTACCCTCGAA 2155 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| ||||| || | |||||||||| || | Sbjct 2154 ACCATCCATTTCTGTCAAAAGCTGGTTAAGCGTTTGCTCTCTTTCATCATTCCCTCCCCC 2095 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | |||| | | ||| ||| || |||||||| ||||||| || || ||||| || Sbjct 2094 AATGCCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGG 2035 Query 9736 TTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 ||| || | | | |||| || ||||| || || || || || ||||||||| Sbjct 2034 AGCATTCTC-CTTG-GCCTTCTTGAACAGATCTCGGACTCGAGATGCACCAACACCAACA 1977 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | | | | | || | || || || || || ||| || || Sbjct 1976 AACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGAACTCCAGCTTCCCCAGC 1918 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || ||| ||||||||||| || || ||||| Sbjct 1917 AATTGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGG 1882 >seq47021 Length=9578 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| | ||||||||||||| | || || | || || || | || Sbjct 3815 GACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCTTACCTCTTAAAGGTTCAAGGG 3756 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| |||||| || ||| ||||||| ||| | || || || || ||||| ||| Sbjct 3755 AAGGTTG-TGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTATTGGAATTCACAAGGA 3697 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | |||||| | | |||||||||| | ||||| || || Sbjct 3696 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACGCATGC 3637 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || ||||| ||||| || || ||||| || Sbjct 3636 ATCTCCCACACTTTTCAACGCTGGAACTCCGAGACCGCA 3598 >seq28723 Length=7348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/286 (69%), Gaps = 18/286 (6%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 |||||||||||| || |||||||| || ||||| || || || | ||||||||| || Sbjct 2933 AAAACCATCCATTTCAGTCAAAAGCTGATTAATTGTCTGCTCTCTTTCATCATTTCCT-- 2990 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 2991 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 3050 Query 9731 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCC 9783 ||||| |||| |||||| | ||||| | ||||| ||| |||| || || Sbjct 3051 CATGGTGCCTTTGA-TTTCGCCTTC----TCAAACAAATCCC--TCACTCTTGATGCACC 3103 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9843 ||||||||||||| ||| ||||| | || || | ||| || || || || | Sbjct 3104 AACACCAACAAACAACTCAACAAATTCTGATGCCGCACAAGAGAAAAATGGCACGCCGGC 3163 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 ||| || |||| |||| || | | ||||| || || |||||| Sbjct 3164 TTCTCCAGCAACTGCTCTAGCCAATAAGGTCTTCCCAGTTCCTGGC 3209 >seq90076 Length=2428 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || |||||||| | || || || || || || || || |||||||| || ||| Sbjct 1850 TTCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTTT 1909 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||| || ||||| || | ||||| || | |||||| |||||| Sbjct 1910 TGCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAACGAG 1969 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || ||||||||||| ||| Sbjct 1970 TTAATCTCGCGAGACGAGGGACTTCAC 1996 >seq51752 Length=12828 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || |||||||| | || || || || || || || || |||||||| || ||| Sbjct 342 TTCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTTT 401 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||| || ||||| || | ||||| || | |||||| |||||| Sbjct 402 TGCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAACGAG 461 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || ||||||||||| ||| Sbjct 462 TTAATCTCGCGAGACGAGGGACTTCAC 488 >seq47681 Length=10123 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187 ||||| || ||| || |||| || |||| | | |||||| |||| ||||| ||| Sbjct 3806 GTTACTGCAATTGTTACTGAAAATCTTAACAAAATAATTGATGTTAATTACTACCCTGTT 3747 Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247 || ||||| | | || |||||| | ||| | ||||||||| | || ||||||||||| Sbjct 3746 GAAACTGCAAGAAGGTCAAATATGCGTCACAGACCAATTGGTATTGGAGTTCAGGGTCTT 3687 Query 105248 GCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTC 105285 || ||| ||||| ||| | | || | |||||||||| Sbjct 3686 GCTGATACGTTCAT-CTTACTTGGCATGGCATTTGATTC 3649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582341128952080