Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq90076 109 6e-19 seq51752 109 6e-19 >seq90076 Length=2428 Score = 109 bits (120), Expect = 6e-19 Identities = 297/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| | || ||||| | ||||| ||||||||||| || || || || || Sbjct 1556 GACGAGAAACACTTCATTACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTT 1615 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | |||||| | | | | || || || ||||| | ||||||||||| | ||| Sbjct 1616 CTCGAAAATCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCGCCGAGGCCCGCGCCTTC 1675 Query 59799 TACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 || | | ||| ||| ||| |||| || |||||||| | |||||| || | ||| Sbjct 1676 TATGGCTTCCAGATCG--CAATCGAGAACATTCACTCCGAAATGTACTCCCTTCTCCTCG 1733 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | | |||| || | ||||| ||| || ||||| ||||| || ||| | | Sbjct 1734 AAACCTACATCAAAGACTCCGAAGAAAAGAACCACCTCTTCCGCGCCATCGAAACGGTGC 1793 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCAT 59973 | || || |||| || | |||||| | | ||||| || || ||| ||| Sbjct 1794 CGTGC-GTCGCCAAAAAGGCCAAGTGGGCCCTCGATTGGATCGACGGCTCCGAGA--CAT 1850 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | || | || || || || || || |||||||||||||| |||||||| || || | Sbjct 1851 TCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTTTT 1910 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | || || || ||||| |||||||| || | |||||||| | | ||||| |||||| Sbjct 1911 GCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAACGAGT 1970 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 | || || || |||||||| || || Sbjct 1971 TAATCTCGCGAGACGAGGGACTTCA 1995 >seq51752 Length=12828 Score = 109 bits (120), Expect = 6e-19 Identities = 297/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| | || ||||| | ||||| ||||||||||| || || || || || Sbjct 48 GACGAGAAACACTTCATTACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTT 107 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | |||||| | | | | || || || ||||| | ||||||||||| | ||| Sbjct 108 CTCGAAAATCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCGCCGAGGCCCGCGCCTTC 167 Query 59799 TACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 || | | ||| ||| ||| |||| || |||||||| | |||||| || | ||| Sbjct 168 TATGGCTTCCAGATCG--CAATCGAGAACATTCACTCCGAAATGTACTCCCTTCTCCTCG 225 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | | |||| || | ||||| ||| || ||||| ||||| || ||| | | Sbjct 226 AAACCTACATCAAAGACTCCGAAGAAAAGAACCACCTCTTCCGCGCCATCGAAACGGTGC 285 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCAT 59973 | || || |||| || | |||||| | | ||||| || || ||| ||| Sbjct 286 CGTGC-GTCGCCAAAAAGGCCAAGTGGGCCCTCGATTGGATCGACGGCTCCGAGA--CAT 342 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | || | || || || || || || |||||||||||||| |||||||| || || | Sbjct 343 TCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTTTT 402 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | || || || ||||| |||||||| || | |||||||| | | ||||| |||||| Sbjct 403 GCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAACGAGT 462 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 | || || || |||||||| || || Sbjct 463 TAATCTCGCGAGACGAGGGACTTCA 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547659899808480