Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq90076 93.3 5e-14 seq51752 93.3 5e-14 seq76642 89.7 6e-13 seq84963 86.0 7e-12 seq29462 84.2 2e-11 seq92792 82.4 8e-11 seq54577 82.4 8e-11 seq9661 82.4 8e-11 >seq90076 Length=2428 Score = 93.3 bits (102), Expect = 5e-14 Identities = 256/380 (67%), Gaps = 18/380 (5%) Strand=Plus/Minus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| | ||| ||||| || | |||||| || || || ||| || |||||| Sbjct 1950 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 1891 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC- 74924 || ||||| || || || ||||| | || || | |||||| || ||||| ||| Sbjct 1890 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAA---TGTCTCGGAGCCGTCG 1834 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGAC--CGCAGGG-ACAGTATCGATCGCT 74981 |||||| | ||||| | || ||| ||| | |||| || || || ||||| || Sbjct 1833 ATCCAATCGAGGGCCCACTTGGCCTTT---TTGGCGACGCACGGCACCGTTTCGATGGCG 1777 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTA 75040 |||||||| ||| ||||||| || |||| | || || || | | ||| ||||| Sbjct 1776 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTT-TCGAGGAGAAGGGAGTA 1718 Query 75041 CGTCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCT 75098 | | || || ||||| |||| ||| ||| |||| | | ||||| | || ||||| Sbjct 1717 CATTTCGGAGTGAATGTTCTCGATTG--CGATCTGGAAGCCATAGAAGGCGCGGGCCTCG 1660 Query 75099 GCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 || | || || || || || | | ||| ||| || | ||||||||||| ||| Sbjct 1659 GCGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAG 1600 Query 75159 GCGGCGAAAAAAGCCAGTAC 75178 |||||||| || || || || Sbjct 1599 GCGGCGAAGAAGGCGAGGAC 1580 >seq51752 Length=12828 Score = 93.3 bits (102), Expect = 5e-14 Identities = 256/380 (67%), Gaps = 18/380 (5%) Strand=Plus/Minus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| | ||| ||||| || | |||||| || || || ||| || |||||| Sbjct 442 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 383 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC- 74924 || ||||| || || || ||||| | || || | |||||| || ||||| ||| Sbjct 382 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAA---TGTCTCGGAGCCGTCG 326 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGAC--CGCAGGG-ACAGTATCGATCGCT 74981 |||||| | ||||| | || ||| ||| | |||| || || || ||||| || Sbjct 325 ATCCAATCGAGGGCCCACTTGGCCTTT---TTGGCGACGCACGGCACCGTTTCGATGGCG 269 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTA 75040 |||||||| ||| ||||||| || |||| | || || || | | ||| ||||| Sbjct 268 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTT-TCGAGGAGAAGGGAGTA 210 Query 75041 CGTCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCT 75098 | | || || ||||| |||| ||| ||| |||| | | ||||| | || ||||| Sbjct 209 CATTTCGGAGTGAATGTTCTCGATTG--CGATCTGGAAGCCATAGAAGGCGCGGGCCTCG 152 Query 75099 GCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 || | || || || || || | | ||| ||| || | ||||||||||| ||| Sbjct 151 GCGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAG 92 Query 75159 GCGGCGAAAAAAGCCAGTAC 75178 |||||||| || || || || Sbjct 91 GCGGCGAAGAAGGCGAGGAC 72 >seq76642 Length=4651 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 407 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 466 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 467 TGAGCTACGAAAGC 480 >seq84963 Length=13327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| |||||| |||||||||||||||||||| ||||| Sbjct 6406 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCAGCTTACTAAACGGGTGCTCTAACCAAC 6465 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6466 TGAGCTACGAAAGC 6479 >seq29462 Length=8652 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 4193 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 4252 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 4253 ACTGAGCTATGAAAGC 4268 >seq92792 Length=2440 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| || | | || |||||||||||||||||||||||||| ||||| Sbjct 221 TGCTTTCGTTGAGAGTTAAACACAAGGCCTCCCGCTTACTAAACGGGTGCTCTGACCAAC 280 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 281 TGAGCTACGAAAGCA 295 >seq54577 Length=9082 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2239 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2298 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 2299 TGAGCTACGAGAGCA 2313 >seq9661 Length=1253 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| || | | || |||||||||||||||||||||||||| ||||| Sbjct 294 TGCTTTCGTTGAGAGTTAAACACAAGGCCTCCCGCTTACTAAACGGGTGCTCTGACCAAC 353 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 354 TGAGCTACGAAAGCA 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546353163491600