Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq119621 102 7e-17 seq61388 102 7e-17 seq55405 87.8 2e-12 seq7711 87.8 2e-12 >seq119621 Length=933 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| ||||| || ||||| || ||||| || || | || || Sbjct 470 CACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTC 411 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| |||||||| ||||| || | | ||||||||| |||||| | | ||| |||||| Sbjct 410 AAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG-ATACCCTCCTTGTCCT 352 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTT 39252 |||||| |||| ||| | || | | ||| ||||| |||| || || || Sbjct 351 GGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTT 293 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| ||||| |||||||||||||| Sbjct 292 TTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| ||||| || ||||| || ||||| || || | || || Sbjct 381 CACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTC 440 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||| |||||||| ||||| || | | ||||||||| |||||| | | ||| |||||| Sbjct 441 AAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG-ATACCCTCCTTGTCCT 499 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTT 39252 |||||| |||| ||| | || | | ||| ||||| |||| || || || Sbjct 500 GGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTT 558 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| ||||| |||||||||||||| Sbjct 559 TTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || ||||| || ||||| || ||| | || ||||| |||||||| ||||| Sbjct 855 CTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCATCCTCAAGTTGTTTGCCAGCAAA 914 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTG---TTTGA 39208 || | | |||||||| |||||| | || || |||||| ||| ||| || || | Sbjct 915 GATCAACCTTTGCTGGTCTGGTGGGATCCCT-TCCTTGTCC-TGAATTTTTGCCTTTACA 972 Query 39209 GCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268 |||| | || ||| ||||| || | |||||| | ||||| || || |||| Sbjct 973 TTGTCG--ATGGTGTCGGAGCTTTCCACCTCAAGAGTGATAGTCTTTCCAGTGAGGGTTT 1030 Query 39269 TAACAAAGATTTGCATCT 39286 | |||||||||||||||| Sbjct 1031 TTACAAAGATTTGCATCT 1048 >seq55405 Length=4719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || ||||| || |||||||| || | || || Sbjct 3210 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGCCCATCCTCC 3269 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || ||||| ||||| | ||||||||| |||||| | || || || ||| Sbjct 3270 AGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATCCCT-TCCTTATCCTG 3328 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| | | | || ||| || || || | || || | || Sbjct 3329 GATTTTTGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCTT 3388 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || |||||||||||||||||||||| Sbjct 3389 ACCTGTGAGAGTTTTAACAAAGATTTGCATCT 3420 >seq7711 Length=5731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || || || | ||| ||||||| || || || || || || || Sbjct 538 AAATATCTGCATACCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAAT 479 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| ||||| ||||| || | | || || ||||| || || ||||| || | |||||| Sbjct 478 ATTGTAATCCGCAAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTG 419 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC-CGTAT 39223 ||| || | || | | || |||||| ||| | | | || | ||| | || ||||| Sbjct 418 CTGATCCGGTGGAATTCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTTGTCAATCGTAT 360 Query 39224 C---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | |||| ||||| |||| || || |||| || ||||| || ||||||||||| | Sbjct 359 CAGAGCTC---TCCACCTCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCT 303 Query 39281 GCAT 39284 |||| Sbjct 302 GCAT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428885235655646