Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq55405 134 9e-27 seq95098 132 3e-26 seq9706 109 4e-19 seq119621 105 5e-18 seq61388 102 6e-17 seq35332 100 2e-16 seq7293 95.1 8e-15 seq93401 93.3 3e-14 seq106908 91.5 1e-13 seq35333 89.7 3e-13 seq7711 89.7 3e-13 seq67990 82.4 5e-11 >seq55405 Length=4719 Score = 134 bits (148), Expect = 9e-27 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||| ||| | || |||||||| ||||| || || ||||| | Sbjct 2507 AATGCAGATTTTTGTTAAGACCTTGACTGGAAAAACTATCACCCTGGAGGTTGAGGGTTC 2448 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||||||||| ||| | || | |||||| ||||| ||||| | || || |||| Sbjct 2447 GGACACTGTTGATAATGTGAAGGC-TAAAATTCAGGACAAGGAAGGGATTCCACCTGATC 2389 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || |||||||| || | |||||||| | ||||||| Sbjct 2388 AGCAGAGGTTGATCTTTGCTGGTAAGCAACTGGAGGATGGGCGCACTTTGGCTGATTACA 2329 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 | || ||||| ||||| || || ||| Sbjct 2328 ATATCCAAAAGGAGTCTACTTTGCAT 2303 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || |||||||| |||||| | |||||||| | Sbjct 3190 ATGCAGATCTTTGTGAAAACCCTTACTGGAAAAACTATCACTTTGGAAGTTGAGAGTTCT 3131 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| || || || || ||| | || ||||| || Sbjct 3130 GACACTATTGACAATGTCAAGGCCAAAA-TTCAGGATAAGGAGGGTATCCCACCAGACCA 3072 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | || ||| | | |||||||| Sbjct 3071 GCAGAGACTGATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACTCTTGCTGATTACAA 3012 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || || || ||| | || || || Sbjct 3011 CATCCAGAAGGAATCAACACTTCACTTGGT 2982 >seq95098 Length=1037 Score = 132 bits (146), Expect = 3e-26 Identities = 169/229 (74%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||||||||| ||||| || ||||| ||||| |||||||| | Sbjct 846 ATGCAAATTTTTGTTAAAACCCTAACGGGTAAGACGATAACTCTTGAAGTTGAGAGTTCC 787 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG-ATC 23728 || || |||| ||| |||| |||| | || || || ||||| | || || | | | Sbjct 786 GATACAATTGATAATGTTAAGGCAAAGA-TTCAAGATAAGGAAGGAATTCCCCCNGGACC 728 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||||| || ||||||||||| ||||| || || | |||||| | | |||||||| Sbjct 727 AGCAACGTTTGATTTTTGCCGGCAAGCAACTAGACGATGGCCGCACTCTGGCCGATTACA 668 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || |||||||| | ||| | || | ||| | || ||||| Sbjct 667 ACATACAGAAGGAGTCCACCCTGCATCTCGTCCTTAGGCTTCGTGGAGG 619 >seq9706 Length=10732 Score = 109 bits (120), Expect = 4e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || || || || | || || || || Sbjct 1216 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATTACGTTAGAGGTGGAGTCT 1157 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || | || ||||| || || | || || || Sbjct 1156 TCGGACACCATCGACAATGTGAAGGCGAAGA-TTCAAGACAAGGAGGGAATCCCACCGGA 1098 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || ||||||||||| || || || |||| ||| ||||| | |||||| Sbjct 1097 CCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGGACTTTGGCCGATTA 1038 Query 23787 CAACATACAAAAAGAGTCCACA 23808 ||| || || || ||||| ||| Sbjct 1037 CAATATTCAGAAGGAGTCGACA 1016 >seq119621 Length=933 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| |||||||||||||| || ||||| || | | Sbjct 32 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACGATCACCCTTGAAGTGGAAAGCTCC 91 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||||| ||||| || || | || || || || Sbjct 92 GACACAATTGATAATGTCAAAGCCNAAAATTCAGGACAAGGAGGGGATCCCTCCGGACCA 151 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || ||||| || || | |||||| | | || ||||| Sbjct 152 GCAAAGGCTTATTTTTGCAGGTAAGCAACTTGAGGATGGACGCACACTTGCTGACTACAA 211 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| ||| | || || || Sbjct 212 CATTCAGAAGGAGTCTACACTGCACTTGGT 241 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| || ||| | ||||| || | | Sbjct 261 ATGCAAATCTTTGTAAAAACCCTGACTGGTAAAACAATAACTTTGGAAGTGGAAAGCTCC 320 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||||| || ||| | || ||||| || Sbjct 321 GACACCATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 380 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||||||||| || || | || ||| | | || || ||| Sbjct 381 CAGAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTATAAC 440 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 441 ATCCAAAAGGAGTCAAC 457 >seq61388 Length=1455 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| |||||||||||||| || ||||| || | | Sbjct 818 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACGATCACCCTTGAAGTGGAAAGCTCC 759 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||||| ||||| || || | || || || || Sbjct 758 GACACAATTGATAATGTCAAAGC-CAAAATTCAGGACAAGGAGGGGATCCCTCCGGACCA 700 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || ||||| || || | |||||| | | || ||||| Sbjct 699 GCAAAGGCTTATTTTTGCAGGTAAGCAACTTGAGGATGGACGCACACTTGCTGACTACAA 640 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| ||| | || || || Sbjct 639 CATTCAGAAGGAGTCTACACTGCACTTGGT 610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| ||||| || |||||||| || || || | | Sbjct 1046 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACTATCACTCTTGAGGTGGAAAGCTCC 987 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||||||| ||||| ||||| | || ||||| || Sbjct 986 GACACCATCGACAATGTAAAGGCAAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 927 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| ||||||||||| || || | ||| || | | || || ||| Sbjct 926 CAAAGGTTGATCTTTGCTGGCAAACAACTTGAGGATGGACGTACCCTTGCTGACTATAAC 867 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 866 ATCCAGAAGGAGTCAAC 850 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| || ||| | ||||| || | | Sbjct 590 ATGCAAATCTTTGTAAAAACCCTGACTGGTAAAACAATAACTTTGGAAGTGGAAAGCTCC 531 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||||| || ||| | || ||||| || Sbjct 530 GACACCATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 471 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||||||||| || || | || ||| | | || || ||| Sbjct 470 CAGAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTATAAC 411 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 410 ATCCAAAAGGAGTCAAC 394 >seq35332 Length=499 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || ||||||||||||||||| Sbjct 15 AATATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTCGAAGTTGAGAGT 74 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || ||||| || ||| | || || ||| Sbjct 75 TCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGAT 134 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || || ||||| || || ||| ||||||| | || || || | ||||||| Sbjct 135 CAGCAAAGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGCCGTACCTTGGCCGATTAC 194 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || || || ||||| Sbjct 195 AATATCCAGAAGGAATCCAC 214 >seq7293 Length=4729 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||||||||| || || | | Sbjct 4249 ATGCAGATCTTCGTGAAAACTTTGACCGGCAAGACAATCACTCTCGAGGTCGAGAGCTCC 4308 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || ||| ||||| || ||| | || ||||| || Sbjct 4309 GATACCATCGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 4368 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || ||||| || || || || |||| || ||||| | |||||||||| Sbjct 4369 CAACGTTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACTTTGGCCGATTACAAC 4428 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 4429 ATCCAGAAGGAGTCAAC 4445 >seq93401 Length=1125 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCC-TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||| ||||| ||||||| | || || || ||||| || || || || || | Sbjct 900 ATGCAGATCTTCGTCAAAACCCNTAACCGGGAAGACGATTACCCTTGAGGTCGAGAGTTC 959 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || | | || |||||| || || ||||| | || || ||||| Sbjct 960 TGATACGATCGACAACGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCCGATCA 1019 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || ||| ||||||| | ||||| || | ||||||||| Sbjct 1020 GCAGCGTCTGATCTTCGCCGGGAAGCAATTGGAAGATGGCCGCACCTTGGCCGATTACAA 1079 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 1080 CATCCAGAAAGAATCCAC 1097 >seq106908 Length=1159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCA-CGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || |||||||| ||||| |||||||| | | || || || ||||||||||||||||| Sbjct 200 AATATGCAGATCTTCGTCAAAACCCTAANCCGGCAAGACCATCACTCTCGAAGTTGAGAG 141 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| | | || || || ||||| || ||| | || || || Sbjct 140 TTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGA 81 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | || || ||||| || || ||| ||||||| | || || || | |||||| Sbjct 80 TCAGCAAAGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGCCGTACCTTGGCCGATTA 21 Query 23787 CAACATACAAAAAGAGTCCA 23806 ||| || || || || |||| Sbjct 20 CAATATCCAGAAGGAATCCA 1 >seq35333 Length=5286 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| |||||||| ||||| ||||| | || || || | Sbjct 194 ATGCAGATCTTCGTTAAAACACTCACGGGTAAAACAATCACCTTGGAGGTGGAGAGTTCC 253 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | ||||| || || ||||| | || || ||||| Sbjct 254 GACACAATTGATAATGTTAAGGC-CAAAATCCAGGATAAGGAAGGAATCCCACCGGATCA 312 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || |||||||| || || || | | || | | |||||||| Sbjct 313 GCAGCGTCTGATCTTCGCTGGCAAACAGCTTGAGGATGGCAGGACCCTTGCAGATTACAA 372 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 373 CATTCAGAAGGAATCGAC 390 >seq7711 Length=5731 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || || || || || || ||||| || || | Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| ||||| | || ||||||||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || |||| || | ||||| || | ||||| ||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||||||||| || Sbjct 251 ATTCAAAAAGAGTCTAC 267 >seq67990 Length=6038 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| | || || ||||| ||| | || || ||||| || |||||| ||||| Sbjct 4445 GACAAGGAGGGTATCCCTCCGGATCAGCAGAGATTGATTTTTGCTGGTAAACAATTGGAA 4504 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||| | | ||||||||||| ||||| ||||| || | || || || || Sbjct 4505 GATGGCCGAACTCTTGCAGATTACAACATTCAAAAGGAGTCAACGCTTCACTTGGTCCTA 4564 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | | |||||| Sbjct 4565 AGGCTCAGGGGAGGA 4579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337489959040136