Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq90076 163 2e-35 seq51752 122 7e-23 >seq90076 Length=2428 Score = 163 bits (180), Expect = 2e-35 Identities = 591/914 (65%), Gaps = 14/914 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAAT-ATT 4315 || || ||||| ||| | ||| || |||||||| ||||| || | | |||||| | Sbjct 2304 TTCTGATATTCCCCTACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGAAGCGAAATCAGN 2245 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTT-TAGAGCTACAA 4374 ||||| |||| |||||||||| | ||| || | ||| || ||| | | Sbjct 2244 CTCCATCCAATCGAACGGATTAGCCACTCCGTACACCTTCCCGCACCCGNAGCGCTCCCA 2185 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 || | ||| |||||||| ||||||||||| ||||| | | | ||| || |||| | Sbjct 2184 ACAGCCTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACCA 2125 Query 4435 ATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 | | |||| || ||||||| || |||||| |||||| || || || | | | Sbjct 2124 A-CGCACACGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCCTTCACT 2066 Query 4494 ATATC-TTTTATTTTATCTTTA--GATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || | ||| | || | ||| | || |||| || | | || || Sbjct 2065 ATCGCCTTTNACGCGCTCCTCGCTGATCTTCGTCTTCATAAGG--CCGTAGAGCAAGCAT 2008 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCC 4609 || ||||| || || | || ||||||| || | || | ||||| || || |||||||| Sbjct 2007 GCGAAATCGCAGTGAAGTCCCTCGTCTC-GCGAGATTAACTCGTTTGAGAAGGTTAATCC 1949 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 |||||||| || | |||||| ||||||||||| ||| ||| || || |||||||| Sbjct 1948 CGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATAT 1889 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 ||||| ||| || || || | || ||| | |||| | || ||| || Sbjct 1888 TCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTCG---AT 1832 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| | | ||||| || || ||||| |||||||| | || | || ||| || Sbjct 1831 CCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAA 1772 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | ||||| | ||||| || || || || | || ||| |||||||| Sbjct 1771 GAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTC 1712 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 || || || || || || || ||||| || || || ||| | || || | ||||| Sbjct 1711 GGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTG 1652 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||||| || || || | | | |||||| || || ||||| ||| || || Sbjct 1651 GACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAA 1592 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGG 5029 || || | || |||| || |||| | ||||||| |||| ||| |||||| | Sbjct 1591 GAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGTGACG 1532 Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 | ||| | | || || ||||| || | ||||||||||| || || ||||| ||||| Sbjct 1531 GAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTCTTGTA 1472 Query 5090 CATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGT 5149 ||| ||| || | || ||||||||||||| ||| || | || || || | Sbjct 1471 CATCTCCCAGATTTGCGGGTACTGAATCGGAAACATGCAGAACCGGTCCGGATTCGGAGC 1412 Query 5150 AAGAAGCGGTTCTT 5163 ||||||||| |||| Sbjct 1411 AAGAAGCGGCTCTT 1398 >seq51752 Length=12828 Score = 122 bits (134), Expect = 7e-23 Identities = 496/774 (64%), Gaps = 11/774 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || || ||||| ||| | ||| || |||||||| ||||| || | | |||||| Sbjct 793 TTCTGATATTCCCCTACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGAAGCGAAATCAGC 734 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||| |||||||||| | ||| || | ||| || ||| | | | Sbjct 733 TCCATCCAATCGAACGGATTAGCCACTCCGTACACCTTCCCGCACCCGAGCGCTCCCAAC 674 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | ||| |||||||| ||||||||||| ||||| | | | ||| || |||| || Sbjct 673 AGCCTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACCAA- 615 Query 4437 CTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | |||| || ||||||| || |||||| |||||| || || || | | ||| Sbjct 614 CGCACACGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCCTTCACTAT 555 Query 4496 ATCTTTTATTTTATCTTTA--GATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 | |||| || | ||| | || |||| || | | || || || Sbjct 554 CGCCTTTACGCGCTCCTCGCTGATCTTCGTCTTCATAAGG--CCGTAGAGCAAGCATGCG 497 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||||| || || | || ||||||| || | || | ||||| || || |||||||| || Sbjct 496 AAATCGCAGTGAAGTCCCTCGTCTC-GCGAGATTAACTCGTTTGAGAAGGTTAATCCCGG 438 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 |||||| || | |||||| ||||||||||| ||| ||| || || |||||||| || Sbjct 437 CATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCC 378 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 ||| ||| || || || | || ||| | |||| | | | | | | ||||| Sbjct 377 TTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATG---TCTCGGAGCCGTCGATCCA 321 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | | ||||| || || ||||| |||||||| | || | || ||| || | Sbjct 320 ATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAG 261 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | | ||||| | ||||| || || || || | || ||| |||||||| || Sbjct 260 GTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTCGGA 201 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || || || || || || ||||| || || || ||| | || || | ||||| || Sbjct 200 GTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGGAC 141 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| || || || | | | |||||| || || ||||| ||| || || || Sbjct 140 TTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAGAA 81 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || | || |||| || |||| | ||||||| |||| ||| |||||| Sbjct 80 GGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGTG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426393072895286