Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq90076 141 1e-28 seq51752 123 3e-23 seq47021 122 1e-22 seq47681 96.9 5e-15 >seq90076 Length=2428 Score = 141 bits (156), Expect = 1e-28 Identities = 366/555 (66%), Gaps = 2/555 (0%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || ||||| ||||| || ||||| || || |||| ||||| ||||| || || || Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAG-ATCCAGAAAA 48256 | || ||||||| ||| || ||||| ||||||||||||| ||| |||| ||| || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAA 1895 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 |||||| ||||| ||| || || || | |||| ||| || | | | | || Sbjct 1894 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTC 1835 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | ||||| | ||||| || || || |||| ||||| || || Sbjct 1834 GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCG 1775 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||| ||| ||||| | | ||||| | ||| || || | | ||| ||||| Sbjct 1774 GAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACAT 1715 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 |||||||||||| || || ||||| ||||| || || || || | || || | || Sbjct 1714 TTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGAC 1655 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || || || | || | | || | ||| || || || || || || || Sbjct 1654 TTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGC 1595 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 || || || | || || |||| || | ||| |||| || || || | | ||||| Sbjct 1594 GAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGTG 1535 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 | || ||| | || | || ||||| || || |||||||| |||||||| ||||| || Sbjct 1534 ACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTCTT 1475 Query 48677 ATACATATTCCATAT 48691 ||||| | ||| || Sbjct 1474 GTACATCTCCCAGAT 1460 >seq51752 Length=12828 Score = 123 bits (136), Expect = 3e-23 Identities = 234/342 (68%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || ||||| ||||| || ||||| || || |||| ||||| ||||| || || || Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAG-ATCCAGAAAA 48256 | || ||||||| ||| || ||||| ||||||||||||| ||| |||| ||| || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAA 387 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 |||||| ||||| ||| || || || | |||| ||| || | | | | || Sbjct 386 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTC 327 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | ||||| | ||||| || || || |||| ||||| || || Sbjct 326 GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCG 267 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||| ||| ||||| | | ||||| | ||| || || | | ||| ||||| Sbjct 266 GAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACAT 207 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 |||||||||||| || || ||||| ||||| || || || || Sbjct 206 TTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAA 165 >seq47021 Length=9578 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | ||| || | |||| | |||| || ||| || | ||| || Sbjct 3275 ACCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCC 3334 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||||||||||||||||||| | |||||||||||| |||| || |||||| ||| || Sbjct 3335 ATTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGA 3394 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| ||||| ||||| Sbjct 3395 GACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 3454 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || ||||| || || ||||| Sbjct 3455 TCCTTCGATACTATCTTCTTTCATG 3479 Score = 100 bits (110), Expect = 4e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| || || || | ||| |||||||||||||| |||||| ||| || | | || Sbjct 3609 AGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATATG 3668 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| |||||| || || || || | ||| |||||||| | || || | ||||| Sbjct 3669 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGCAACCCTCATCA 3727 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 |||| |||||||| ||||| || Sbjct 3728 ACATGTGCTGAGGCCTTTCCAC 3749 >seq47681 Length=10123 Score = 96.9 bits (106), Expect = 5e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | || ||||||||||| || |||||| || ||| | | || | Sbjct 5431 GTTCCAGCATTAAAAAGCGTTGGAGATGCATGTGTGAACCATCGTTGAGACATCATATGG 5490 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || || || || | ||| ||||| || || || || | |||||| Sbjct 5491 TATGTTTTGATGGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAA 5549 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| ||||| ||||| | | ||| | || | ||||| | ||| || | || | Sbjct 5550 CATATGTTGAGGCCTTTCCA-CAACTTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCAA 5608 Query 78577 AAGTTTTAAAACCAAAATA 78595 |||||| || |||||||| Sbjct 5609 GAGTTTTGAAGCCAAAATA 5627 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | || |||| ||| | || | || |||||||| ||| || Sbjct 5059 ACCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCC 5118 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || || |||||||||||| ||||||||| || |||| ||||| || || || Sbjct 5119 ATTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGA 5178 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 5179 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATAT 5238 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 5239 TCCTTCAATACTATCATCTTTCATG 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693573463602880