Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq47021 149 9e-31 seq90076 116 5e-21 seq47681 109 8e-19 seq51752 107 3e-18 >seq47021 Length=9578 Score = 149 bits (164), Expect = 9e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | |||||| | |||| | |||| || ||| || | |||||| Sbjct 3275 ACCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCC 3334 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 |||||||| |||||||||||| | |||||||||||| |||||| |||||| ||| || Sbjct 3335 ATTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGA 3394 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 3395 GACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 3454 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 || || |||||||| || ||||| Sbjct 3455 TCCTTCGATACTATCTTCTTTCATG 3479 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||||||| ||| || | |||||||| | |||||| ||| ||| || Sbjct 2766 CTCTCTTTCATATTGTGCATACAATCTCTCAAATTCTGCACCCCAACAATCTGCCAGTCC 2825 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||| || ||||| | |||||||| | |||| || ||||| || |||||| Sbjct 2826 TGGAGCTTCGTTAGGACAAAATAATGACCATTGCCCATTACTCTGAACCCTTTCCATAAA 2885 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||||||||| ||| || ||| ||| ||||| Sbjct 2886 CAGATCAGGTACCCAGAGTGCATAAAACAGATC 2918 Score = 100 bits (110), Expect = 4e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| || || || | ||| ||||||||||| ||||||||| ||| || | | || Sbjct 3609 AGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATATG 3668 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| |||| | | || ||||| | ||| |||||||| | ||| || | ||||| Sbjct 3669 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGCAACCCTCATCA 3727 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| |||||||| | ||| ||| ||| | | || || | ||| || | || | Sbjct 3728 ACATGTGCTGAGGCCTTTCCACAACCTTCCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 3787 Query 77172 AAGTTTTAAAACCAAAATA 77190 |||||||| ||||| || Sbjct 3788 GGGTTTTAAAGCCAAAGTA 3806 >seq90076 Length=2428 Score = 116 bits (128), Expect = 5e-21 Identities = 377/581 (65%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || ||||| ||||| || ||||| || || |||| ||||| ||||| || || || Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAA 46745 | || ||||||| ||| |||||||| ||||||||||| | ||| |||| ||| || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAA 1895 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCG--TAACTGGCATCATTA 46803 |||||| ||||| || ||||| || | |||| ||| || | || | | | Sbjct 1894 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGC--CG 1837 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | ||||| | ||||| | |||||||| || || |||| ||||| || || Sbjct 1836 TCGATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 1777 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 ||||| ||| ||||| || ||||| | || || || | | ||| ||| Sbjct 1776 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTAC 1717 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 ||||| || |||||||| || || || ||||| || || || || | || || | Sbjct 1716 ATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCG 1657 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 | || || ||| | || | | | | ||| || || || || || || Sbjct 1656 ACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCG 1597 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAG 47103 || || || || | || || |||| || | ||| || || | || || | | |||| Sbjct 1596 GCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAG 1537 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | | || ||| | || | || ||||| || || ||||| || || ||||| ||||| Sbjct 1536 TGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTC 1477 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || ||||| | ||| || | | || || |||||||| || Sbjct 1476 TTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACAT 1436 >seq47681 Length=10123 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | ||||||| ||| | || | || |||||||| ||| || Sbjct 5059 ACCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCC 5118 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || || || |||||||||||| ||||||||| || ||||||||| || || || Sbjct 5119 ATTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGA 5178 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 5179 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATAT 5238 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 5239 TCCTTCAATACTATCATCTTTCATG 5263 Score = 102 bits (112), Expect = 1e-16 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | || ||||||||||| ||||||||| || ||| | | || | Sbjct 5431 GTTCCAGCATTAAAAAGCGTTGGAGATGCATGTGTGAACCATCGTTGAGACATCATATGG 5490 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || ||||| | ||| ||||| || ||||| || | |||||| Sbjct 5491 TATGTTTTGATGGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAA 5549 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| ||||| | ||| ||| ||| | || | ||||| | ||| || | || | Sbjct 5550 CATATGTTGAGGCCTTTCCACA-ACTTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCAA 5608 Query 77172 AAGTTTTAAAACCAAAATA 77190 |||||| || |||||||| Sbjct 5609 GAGTTTTGAAGCCAAAATA 5627 >seq51752 Length=12828 Score = 107 bits (118), Expect = 3e-18 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || ||||| ||||| || ||||| || || |||| ||||| ||||| || || || Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAA 46745 | || ||||||| ||| |||||||| ||||||||||| | ||| |||| ||| || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAA 387 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCG--TAACTGGCATCATTA 46803 |||||| ||||| || ||||| || | |||| ||| || | || | | | Sbjct 386 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGC--CG 329 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | ||||| | ||||| | |||||||| || || |||| ||||| || || Sbjct 328 TCGATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 269 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 ||||| ||| ||||| || ||||| | || || || | | ||| ||| Sbjct 268 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTAC 209 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 ||||| || |||||||| || || || ||||| || || || || Sbjct 208 ATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAA 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711810262861440