Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq422 194 2e-44 seq144 172 6e-38 >seq422 Length=101449 Score = 194 bits (214), Expect = 2e-44 Identities = 578/875 (66%), Gaps = 24/875 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | ||| | || || || || |||||||| || | || || || |||| Sbjct 43477 TGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAACTCC 43536 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| |||||| | | | | | ||| |||||| | || | | ||| Sbjct 43537 ATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAATAAC 43596 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 | |||||||||||| || |||||||| | ||| || || | |||||| || | | ||| Sbjct 43597 CGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 43655 Query 16856 ACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 | ||||| || || || ||| | ||| || ||||||| || || ||| Sbjct 43656 GCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAATTGA 43715 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTT--AAGATGTTTAAACATCAGACATGCGAAA 16972 || || || || || | || | |||| | || | |||| ||| |||||| Sbjct 43716 TTTCACACGATCTTC--ACTAAGCTTGAATCGAAGAAGACTATAAATCAAACAAGCGAAA 43773 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 || ||||| | || |||||||| ||| |||||||| || || || | || ||||| Sbjct 43774 TCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATT 43833 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 ||||||||||| ||||| || || | || || || ||||| ||||| || Sbjct 43834 AAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCA 43893 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTA-CGTCGCGTCTTTGTTACGAATCCATTT 17151 ||| | ||||| || | | |||||| ||| | | | | | | || ||| ||||||| Sbjct 43894 ACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA-TCCGT--CGA-TCCATTT 43949 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA---ATA 17207 | | |||| | ||||| | | ||| ||| || ||||| || || | || || Sbjct 43950 CATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGAGATG 44009 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 || ||||| ||| | | | | ||||| ||||||| || || || ||||| || | Sbjct 44010 ATCTCTCTCTTTGTTAT----CTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAG 44065 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||| || ||||| || || || ||||||||||||||| || || || | || |||| Sbjct 44066 AGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAA 44125 Query 17328 CTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 | || || | |||||| | |||||| || ||||||||||| |||||||| Sbjct 44126 CATCGGACAT-GAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAG 44184 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTC-CGGTGTAAG--AACGCGCCAGTCC 17443 || || | || || || ||||| | | |||||| || |||| | |||||| Sbjct 44185 AAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTCG 44244 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 ||||| |||| ||| |||||||||| |||||| || ||| | || ||||| Sbjct 44245 CGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTTTG 44304 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || | | ||||| || ||||| Sbjct 44305 TACATCTCCCATATCTGAGGATATTGGATTGGGAA 44339 >seq144 Length=115930 Score = 172 bits (190), Expect = 6e-38 Identities = 564/855 (66%), Gaps = 25/855 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| ||||| ||||| ||||| ||||| |||| || || ||| | Sbjct 56387 TTTGGTAATCACCAACACGTTTCTCGAAGAAGTTCGTTTTACCCTGAAGCGAGATAAGTT 56328 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| |||||||| | | | ||| |||||| || | | | | Sbjct 56327 CCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAAAA 56268 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||||||||| ||||| || ||||| || | ||| || || | |||||| || | | || Sbjct 56267 GTCTATCCGCAACAAACTCAATATACTGACTCATCAACTCACGGTTCATCCCAACCA-AC 56209 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT- 16911 | | ||||| || || || ||| | ||| || | || || || | || Sbjct 56208 GCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACGGCGTCGCAGACGATT 56149 Query 16912 -ACTAGCAACTCGTTCCTCGGACGGTGTA-TGTTTAAGATGTTTAAACATCAGACATGCG 16969 ||| || || ||||| | | | | | | |||| | | | | || || ||| Sbjct 56148 GACTTC--ACGCGCTCCTCCGTCAGCTTCGTCCTCAAGA-GCGTGTAGAGGAGGCAAGCG 56092 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 |||||||| ||||| || ||||||| ||| | ||||||||| || || || || ||| Sbjct 56091 AAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGC 56032 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || |||||||||||| | ||| || || | | ||| || || ||||| ||||| Sbjct 56031 ATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCT 55972 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || ||| | || || || | | |||||| ||| | || | || || ||||| Sbjct 55971 TCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCCGT--CG-ATCCAA 55915 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA---A 17205 || | |||||| ||||| | | | |||| || ||||| || || | || | Sbjct 55914 GTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGA 55855 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | || ||||| || ||| || | || |||||||||| || || || ||||| || Sbjct 55854 TGATCTCTCTCTT---TGT-TATCTTTGATGTACGTATCGAGAAGGAGACTATACATCTC 55799 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTT 17324 ||| || || ||||| || || ||||| |||||||| |||||| || || |||| | || Sbjct 55798 GGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCCGAGACTT 55740 Query 17325 GAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 |||| || || | ||||||| || ||||| || ||||| ||||| |||||| Sbjct 55739 GAACATCTGACAT-GAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGCG 55681 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAGTC 17442 || || || | | || || ||||| | ||| ||| | | ||| ||| || Sbjct 55680 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-ACCGTCGTTTAGATTCTCCCAATC 55622 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 | |||| |||| ||| |||||||||| |||||| || || | || || || Sbjct 55621 GCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTT 55562 Query 17503 ATACATATTCCAAAT 17517 |||||| | ||| || Sbjct 55561 ATACATCTCCCAGAT 55547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517495074610800