Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq422 170 2e-37 seq144 134 1e-26 >seq422 Length=101449 Score = 170 bits (188), Expect = 2e-37 Identities = 397/587 (68%), Gaps = 14/587 (2%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| || ||||| || ||||||||||| ||| ||||||||||| ||||| | Sbjct 43764 ACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAG 43823 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || |||||| ||||||||||| |||||||| || | | ||| || || ||||| Sbjct 43824 TCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAA 43883 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA-CGTAG-CATCTTTATTA 16378 ||||| ||||| | |||||||| | | |||||| ||| | | | | ||| | Sbjct 43884 GATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATCCGT---- 43939 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 || ||||||||| |||||| ||||| | ||| |||| || ||||| || || Sbjct 43940 CG-ATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCG 43998 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 || | | ||| | || | |||| | ||||| ||||| | || | ||| ||| Sbjct 43999 CGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATAC 44058 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 || || ||||| || ||||| || || || |||||||| || ||| |||||||| | Sbjct 44059 ATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAG 44118 Query 16559 ATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 || || || || || | ||||| | || ||||| ||||| ||||| ||| Sbjct 44119 ATCTGAACATCGGACAT-GAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGC 44177 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAAG--AATATG 16674 || || || || | || ||| || ||||| | | |||||| | |||| | | | Sbjct 44178 GGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTC 44237 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| || ||||| |||| ||| |||||||| | ||||| || ||| | || Sbjct 44238 CCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGC 44297 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA-ATAC 16779 ||||| ||||| | ||| || | | ||||| | |||||| |||| Sbjct 44298 TTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATAC 44344 >seq144 Length=115930 Score = 134 bits (148), Expect = 1e-26 Identities = 568/879 (65%), Gaps = 31/879 (4%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||||| ||| ||||| ||||||||||| ||||| |||| | || ||| || Sbjct 56387 TTTGGTAATCACCAACACGTTTCTCGAAGAAGTTCGTTTTACCCTGAAGCGAGATAAGTT 56328 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| |||||||| | | | |||| |||||| || || | | | Sbjct 56327 CCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAG---CGCACCCA 56271 Query 16032 A---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-A 16087 | |||||| || ||||| || ||||| |||| ||| || || | || || || | | Sbjct 56270 AAAGTCTATCCGCAACAAACTCAATATACTGACTCATCAACTCACGGTTCATCCCAACCA 56211 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || | ||||| || | | ||| | | || ||| | || || || | | Sbjct 56210 ACGCGCAA-GGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACGGCGTCGCAGACG 56152 Query 16148 ATA----TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 || || |||| | |||| | || | | | | | | | || || Sbjct 56151 ATTGACTTCACGCGCTCCTCCGTCAG-CTTCGTCC---TCAAGAGCGTGTAGAGGAGGCA 56096 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 ||||| ||||| |||| |||||||||| ||| | |||||| || || ||||| || Sbjct 56095 AGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACC 56036 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATA 16322 ||||| |||||||||||| | |||||| || | |||| || || || ||||| | Sbjct 56035 AGGCATGAGTCCTCGTTTCTTAAGCCAGAAGAT-GGAGCAGAAGCTACCGGAGAAGAAGA 55977 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTTATTAC 16379 |||| ||||| | || ||||| | | |||||| ||| | || || ||| | | Sbjct 55976 TACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAG-ATCCGT----C 55922 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 | ||||| || |||| | ||||| | | ||| || ||||| || || Sbjct 55921 G-ATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGC 55863 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 || | | ||| | || | |||| | || |||||||| | || | ||| |||| Sbjct 55862 GGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACA 55803 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCT 16558 | || || || || ||||| || || ||||| ||||| ||| ||||| || ||||||| Sbjct 55802 TCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCCGAG 55744 Query 16559 ATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | ||| || || || | |||||| || || ||||| ||||||||||| ||| Sbjct 55743 ACTTGAACATCTGACAT-GAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGC 55685 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 || || || || | | ||| || ||||| | ||| | | ||| | | ||| Sbjct 55684 GGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCA 55625 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 ||| | |||| |||| ||| |||||||| | ||||| || || | || || Sbjct 55624 ATCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 55565 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 |||||||| | ||| || | ||| || || ||||| Sbjct 55564 CTTATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 55526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511364473169200