Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq210 86.0 5e-12 >seq210 Length=153681 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 19001 TCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATAT 19060 ||||||||| || ||| | || ||| | || || ||| | || ||| | || | ||| || Sbjct 139647 TCAGTTTTATGTGGCAGAAGGAGAACTCTCATGTCAAATGTATCAGCGTTCAGCGGACAT 139706 Query 19061 GGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCA 19120 ||||||||| |||||||| ||||||||| || | |||||||| | || | || || Sbjct 139707 GGGCCTTGGTGTACCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGTATGCTCGCTCA 139766 Query 19121 TGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTT 19180 || | ||| | || ||||| || ||| || |||||||| ||| | ||| Sbjct 139767 CGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAA 139826 Query 19181 GAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCC-CCAAAACCTTTTCCT 19235 |||||| || || | ||| ||| || | |||| |||||||| |||||| Sbjct 139827 AAATCATGTAAGGCCTCTGCAAGAGCAACT-TCAGAATCCACCAAAACCATTTCCT 139881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399465973461450