Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq422 221 1e-52 seq144 145 9e-30 seq330 91.5 2e-13 seq1401 86.0 7e-12 >seq422 Length=101449 Score = 221 bits (244), Expect = 1e-52 Identities = 431/627 (69%), Gaps = 15/627 (2%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||||||| |||||||| || || ||||| |||||||| || | ||||||||| || Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 || ||||| ||||||| || || || || | ||| || || || |||| | | || || Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGA 43877 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307 ||||| || ||||| || ||||| || | | || ||| | | || || Sbjct 43878 GAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA----GCTTTGAG 43933 Query 24308 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || || ||||| || ||||| | || ||||| |||||||||| || || || | Sbjct 43934 ATCCGTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAA 43993 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || ||||||| | | | || || ||||||| | ||| ||||| | | |||| Sbjct 43994 TTGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGAC 44053 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||||| || || ||||| || ||||| || |||||||||||||| || | ||||| Sbjct 44054 TATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCT 44113 Query 24484 CGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 ||| ||||| || || ||| ||||| || || ||| || || || ||||| Sbjct 44114 CGGAGATCTGAACATC-GGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCT 44172 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG--T 24599 || || || || || | ||| ||||| || || | | |||||| | || | || Sbjct 44173 GATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAA 44232 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || | ||| || |||||| ||||| ||| |||||||| | ||||| ||||| || Sbjct 44233 TTTTCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCT 44292 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || || ||||| ||||| | ||| || | | ||||||| ||||| || ||| |||| | Sbjct 44293 TCGGCTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGA 44352 Query 24720 TTTGGATTTTTTGCAAGGATTGGTTCC 24746 | |||| || || || || |||||| Sbjct 44353 TCTGGAGTTGGTGTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 145 bits (160), Expect = 9e-30 Identities = 393/591 (66%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||||| || ||||||| | || |||||||| || || || | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| || || || || |||||||| || ||||| ||| | | | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT--GT 24311 || ||||| || || || || | | || ||| | | | || || || Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAA----GGTTTGAGATCCGT 55923 Query 24312 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | ||||| | || ||||| || ||||| || || || || || Sbjct 55922 CGATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGC 55863 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||||||| | | | || || ||||||| | || ||||| | | |||||||||| Sbjct 55862 GGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACA 55803 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || |||||||| || ||||| || || || |||||||||||| | ||||| | | Sbjct 55802 TCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGA 55743 Query 24490 TCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 || || ||| ||| |||||| || | ||| || || || ||||| || Sbjct 55742 CTTGAACATCT-GACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCG 55684 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCA 24607 || || || || | || ||||| || || | ||| | | || |||| || | ||| Sbjct 55683 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCCA 55625 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| |||| |||| ||| |||||||| | ||||| || ||||| || || || Sbjct 55624 ATCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 55565 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 |||||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 55564 CTTATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq330 Length=201778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||| || | ||||||| || || || |||||| || ||| | || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | |||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||| ||||| |||||||| | ||| | | ||| | | ||| ||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||||||||| || | |||| ||| || || || || || || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATAGATGAT 18188 >seq1401 Length=32814 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | |||| ||| || | ||| | || | || |||||| | |||||| Sbjct 17342 TCCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACC 17283 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 17282 ATTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 17223 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 17222 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 17163 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 |||||| || |||||||| ||||| Sbjct 17162 GCCCTCAATGCTATCATCTTTCATG 17138 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 53515 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 ||| ||||| || ||||||| ||||| ||||||||||| |||||||| || | | | || Sbjct 18660 GAGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 18601 Query 53575 AGAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 || ||| ||| ||| | |||||| ||||| | ||||||||| |||||||| || Sbjct 18600 TGAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593663637928800