Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3586 95.1 1e-14 seq308 95.1 1e-14 seq2666 91.5 1e-13 >seq3586 Length=17470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||| | ||| | |||||| | || ||||| ||||| || ||| || | | Sbjct 5309 ATGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGATGTCGAGAGCTCT 5368 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| ||||| ||||| | || ||||| Sbjct 5369 GATACCATCGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAG 5428 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | ||||| || || ||||| || |||||| | || ||||||||||||| Sbjct 5429 CAAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 5488 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || || ||| |||| | |||||| |||| || Sbjct 5489 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGATTAAGAGGTGG 5535 >seq308 Length=205501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | ||||| | || ||||||||||||||| ||| || | | Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | | || |||| || ||| || || ||||| | || || ||| Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAA 131272 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| |||||||| || ||||| || || ||| ||| | ||||||||||| Sbjct 131271 CAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAAC 131212 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || ||||| ||||| | || | ||||||| Sbjct 131211 ATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGG 131165 >seq2666 Length=20083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| | || ||||||||||| ||| ||| || | | Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | | || | ||| || ||| ||| |||||||| | | | ||| ||| Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCACGACAAAGAAGGGATCCAAGCAGACCAA 9389 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || ||||| ||||| |||||| | ||| | || || || || Sbjct 9388 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCAGACTATAAC 9329 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || |||||||| || |||||| | ||| | || | || || ||| Sbjct 9328 ATCCAAAAGGAATCAACACTTCACCTTGTGCTTCGTCTTCGTGGTGGG 9281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428295229105550