Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3586 116 3e-21 seq308 113 4e-20 seq275 105 6e-18 seq2666 95.1 1e-14 seq516 89.7 4e-13 >seq3586 Length=17470 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| ||| | ||||||||||||||| ||||| ||||| || Sbjct 5763 CCACCTCTCAGACGAAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 5704 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| || || ||| | |||||||||||||| ||| || Sbjct 5703 AGTGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 5644 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | ||| ||| | ||| Sbjct 5643 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCGACC 5584 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| |||||||| | || |||||||| || ||||| Sbjct 5583 TCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || ||||| ||||| ||||| || | | ||||| |||||||| || Sbjct 6189 GTTGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCATCCTCAAGCTGTTTCCCA 6130 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||| |||||||||||| || | || || || || |||||| || Sbjct 6129 GCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATCTTAGCCTTG 6070 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| || | ||||||||| || || |||| ||| Sbjct 6069 ACATTGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTTTTCCCTGTTAGAGTT 6010 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 6009 TTGACAAAGATCTGCAT 5993 >seq308 Length=205501 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | || || || || || ||||| || || || Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| |||||||| || ||| | || |||||||| |||||| || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| ||| || | | | || || ||| | ||| | Sbjct 131285 ATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAACT 131344 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||| ||||| || | ||||| |||||||||||||| Sbjct 131345 TCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || |||||||| || ||||| || || || || ||| | | ||| Sbjct 130724 AGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGACCATCC 130783 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || | || |||||||| |||||| || | ||||||||||| Sbjct 130784 TCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCT 130843 Query 21084 GCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||| |||||| ||||| | | |||| || || | |||| ||||| || ||||| Sbjct 130844 TGGAT-TTTTGTCTTCACATTGTCGACTGTGTCCGAGCTCTCCACTTCCAAAGTTATGGT 130902 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || || ||||| || ||||| Sbjct 130903 TTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 >seq275 Length=143682 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| |||| ||| ||||||||||| ||||| ||||| ||| Sbjct 123901 CCACCACGGAGCCTGAGGACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 123842 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| |||||||| || || | || || | |||||||||| || Sbjct 123841 AATGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 123782 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || ||| | ||| Sbjct 123781 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACC 123722 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAA-CGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| || || || || || || ||||| Sbjct 123721 TCAAGGGTGATGGTCTTTCCGGTCAAGAGTCTTCACGAAGATCTGCAT 123674 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| ||| | || ||||||||||||||||| || || |||| ||| | | ||||| Sbjct 123655 CACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTC 123596 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| || || || | || || | |||||||||| || | |||||||| || Sbjct 123595 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTG 123536 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| ||| || | | | | ||| ||| | ||| ||| | ||| || ||||| Sbjct 123535 GATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTT 123476 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | || || || ||||||||||| Sbjct 123475 CCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | || |||||||| || ||||| ||||| |||| || || ||||||| Sbjct 139536 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCGTCCTCA 139477 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 || || || || || | || | ||||||||||||| || | || |||||||| | Sbjct 139476 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGG 139417 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || |||||| | | ||| || ||| |||| |||| || || ||||| Sbjct 139416 ATTTTAGCTTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGTCTTT 139357 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || || |||||||| Sbjct 139356 CCGGTCAAGGTCTTAACGAAGATTTGCAT 139328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | || |||||||| || || || || || |||| ||| | | ||||| Sbjct 139764 ACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATCCTCA 139705 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||| || || || | || | |||||||||||| || | || || ||||| | Sbjct 139704 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCTTGG 139645 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| |||||| | | | | || ||| | |||| || | |||||||||||| Sbjct 139644 ATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTA 139585 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || ||||| || || ||||| Sbjct 139584 CCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 >seq2666 Length=20083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || |||||||| ||||||||||| || || || || | || || || || ||||| Sbjct 9312 GTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTCAAGTTGCTTGCCA 9371 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||||||||| ||||| | | | ||||| |||||| ||||| || Sbjct 9372 GCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTCGTGAATCTTGGCCTTG 9431 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || ||| | ||| ||| | ||| ||||| ||||| |||| ||| Sbjct 9432 ACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGGTTTTGCCAGTTAGGGTT 9491 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 9492 TTCACAAAAATCTGCAT 9508 >seq516 Length=37039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| || | ||| | ||| ||||| ||||| ||||| || |||| Sbjct 9760 TTCCACCGCGGAGACGGAGAACAAGATGAAGAGTCGACTCTTTTTGGATGTTGTAATCCG 9819 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | | | | | || || ||||| || |||||| | ||||| |||||||||||| Sbjct 9820 CTAAAATGCGACCATCTTCTAGCTGCTTCCCCGCAAAGATAAGCCTCTGCTGGTCCGGTT 9879 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | || |||||| ||| Sbjct 9880 GGATCCCTTCTTTGTCATGAATCTTTGCCTTGACATTGTCAACCGTATCAGAACTCTCGA 9939 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | | ||||||||||| || || || |||||||| || ||||| Sbjct 9940 CCTCAAGAATGATGGTCTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 9988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422219007521960