Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3586 116 6e-21 seq308 116 6e-21 seq683 111 2e-19 seq1061 98.7 1e-15 seq275 95.1 2e-14 seq1002 86.0 9e-12 >seq3586 Length=17470 Score = 116 bits (128), Expect = 6e-21 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||| | || | || ||||| || ||||| || || ||| | || | || ||| Sbjct 5309 ATGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGATGTCGAGAGCTC- 5367 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| |||| || || ||||| ||||| ||||| || || || |||| Sbjct 5368 TGATACCATCGACAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGCATTCCTCCGGATC 5426 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | || || || |||||||| |||| ||| | || || || | ||||| | Sbjct 5427 AGCAAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 5486 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||||||||||| | || |||||| | || ||| |||||||||| Sbjct 5487 ACATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGATTAAGAGGTGGTAT 5538 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || |||||||| ||||| || || | ||| |||| ||| | Sbjct 5993 ATGCAGATCTTTGTCAAAACTCTAACAGGGAAAACCATTACCCTCGAGGTTGAGAGCTCA 6052 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | || || || ||||||||||| || || ||||| || || Sbjct 6053 -GACACAATCGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 6111 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || || || ||||| | |||||| |||| ||| | | || || || Sbjct 6112 GCAGAGGCTTATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAA 6171 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||| | || | || || ||| | || |||||||| Sbjct 6172 CATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCGTCTTCGTGGTGGTAT 6222 >seq308 Length=205501 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | || || || || |||||||| || || |||| |||| ||| Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTC- 131333 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || |||||||| || ||||| || || || || || Sbjct 131332 TGACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCA 131273 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| || ||||| | |||||| |||| || | | ||||| || Sbjct 131272 ACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAA 131213 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| | |||||||| | ||| | |||| ||||| Sbjct 131212 CATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGGTAT 131162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || || || ||| | ||| ||||| | Sbjct 131619 ATGCAAATCTTTGTTAAGACTCTTACAGGGAAGACCATTACTCTTGAGGTTGAAAGCTCT 131560 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||||||||| || || || || || Sbjct 131559 GACACTATTGATAACGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCTCCGGACCAG 131500 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || || | | ||||| || Sbjct 131499 CAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGGACTCTTGCGGATTACAAC 131440 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || | || | ||| | || ||||| || Sbjct 131439 ATCCAGAAGGAGTCAACACTTCACCTTGTCCTTCGTCTTCGCGGTGGCAT 131390 >seq683 Length=32930 Score = 111 bits (122), Expect = 2e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 || ||||| || |||||||| |||||||| ||| | || ||||| || ||||||||||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT- 124750 ||| ||||||| |||| ||||| || ||||| ||||| || || | || |||||||| Sbjct 24568 GATGGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTTG 24627 Query 124751 ACGTTTACGAGGTGG 124765 | | ||| ||||||| Sbjct 24628 AGGCTTA-GAGGTGG 24641 >seq1061 Length=128926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| |||||||||||||||||||||||||| || ||||| || || ||| | Sbjct 83115 CAGGACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTT 83056 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||| | ||||| ||| ||||| || || || ||||| || ||| | ||| Sbjct 83055 GAGGATGGCCGAACTCTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCAT 83002 >seq275 Length=143682 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||||||||| | ||||| || || || || || || || | || | || ||| Sbjct 123446 ATGCAAATATTCGTGAAGACTCTCACCGGGAAGACAATCACCCTTGAAGTCGAGAGC-TC 123504 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| || || || ||||| |||||||| || || || || Sbjct 123505 TGACACTATTGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGACCA 123564 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || ||||| || | |||||| |||| || || | ||||| || Sbjct 123565 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAA 123624 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | |||||||| || ||| | || || ||||| Sbjct 123625 CATTCAAAAGGAGTCAACCCTTCATTTGGTGTTGCGTCTTCGTGGAGGTAT 123675 >seq1002 Length=111223 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| | |||||| | ||||||||||||||| | |||||||||||||||| | Sbjct 96129 GCAATGTTAAACGTTACACCGAGACCCATATCAGCTGAGCGCTGATACATTTGACATGAA 96070 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | |||| || ||| |||| || || || || | |||| Sbjct 96069 AGTTCTCCATTCGCA---ACATAGAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATC 96013 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC-TAGAT--TCAGGttta 205659 | || ||| ||| ||||| |||| | |||||| ||| | ||| ||||| || Sbjct 96012 AGCTTAAGATCAGGAGGGTTCCAAGCTG---ACATTATAATTCGTCGATCATCAGGATTG 95956 Query 205660 ttttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTA 205719 || || || || || || | || | | |||||||||||||| ||||||| | | Sbjct 95955 TTCTTGATCTTGTTAATTACATCTAACAGCTGATCAAATCCTTGGCCAGTATAATCAGCA 95896 Query 205720 TCCATATC 205727 | |||||| Sbjct 95895 TGCATATC 95888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755382248608000