Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq308 118 1e-21 seq275 118 1e-21 seq3586 109 6e-19 seq863 96.9 4e-15 seq2666 86.0 7e-12 >seq308 Length=205501 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||| ||| | ||||| |||| || |||||| || || ||||||||||| Sbjct 130709 CCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 130768 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| ||||||||||| ||||||| ||| ||||| | || Sbjct 130769 AGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 130828 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||| ||||||| || | | | || ||||| |||| ||| Sbjct 130829 ATCCCTTCCTTGTCTTGGATTTTTGTCTTCACATTGTCGACTGTGTCCGAGCTC---TCC 130885 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || || ||||| ||||| || ||||| Sbjct 130886 ACTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||||||||| | || || || || || |||||||| || Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| |||||||| || ||||||| ||| ||||| | || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTC---GCTCGATTC 43132 | | |||||||| ||| | || | || | | | | || || |||| |||| || Sbjct 131285 ATTCCTTCCTTGTCT-TGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTC---TC 131340 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||||||||| || || || || ||||| |||||||| Sbjct 131341 AACTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || |||||||| | || || |||||||||||||| || Sbjct 131428 CTCCTTCTGGATGTTGTAATCCGCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAA 131487 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | | || || || ||| ||| |||| | Sbjct 131488 GATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACGTT 131547 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || || | || ||||| || || || || ||||| Sbjct 131548 ATCAATAGTGTCAGAGCT---TTCAACCTCAAGAGTAATGGTCTTCCCTGTAAGAGTCTT 131604 Query 43169 TACAAAGATTTGCAT 43183 |||||||||||||| Sbjct 131605 AACAAAGATTTGCAT 131619 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| || ||||| || || ||||| || | || || |||||||||||||| || Sbjct 130516 CTCTTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGCTTACCAGCAAA 130575 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||||| ||| ||||| | || | | || |||| | ||| | |||| || | Sbjct 130576 GATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGT-CTTGAATCTTTGCCTTCACAT 130634 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | || ||||| |||| || || || | || |||||||| || ||||| |||| Sbjct 130635 TATCTACAGTGTCTGAGCTC---TCAACCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCT 130691 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| || ||||| Sbjct 130692 TGACAAAAATCTGCAT 130707 >seq275 Length=143682 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||||||||||||| | || |||||||||||| |||||||| ||| Sbjct 123672 CCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCC 123613 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 123612 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 123553 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||| ||| ||| || ||||| ||| | | | ||||| |||| || Sbjct 123552 ATACCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCAATAGTGTCAGAGCTC---TC 123497 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || || ||||| || || |||||||| Sbjct 123496 GACTTCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || |||||| |||||||| | ||| |||||| || || ||||| |||||| Sbjct 139554 CCACCACGTAGACGCAAGACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 139495 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || || ||||| || ||||| || | || ||||||||| | || Sbjct 139494 AAAGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 139435 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 43132 | | ||||||||| |||||| ||| | ||| | | | ||||| ||| || Sbjct 139434 ATTCCCTCCTTGTCTTGGATTTTAGCTTTCA-CGTTGTCGATGGTGTCAGAACTC---TC 139379 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||| || || || || | ||||| || ||||||||||| Sbjct 139378 CACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTAACGAAGATTTGCAT 139328 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || ||||||||| || ||||| ||||||| || || | || || Sbjct 123883 ACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 123824 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || |||||||| ||||| ||||||||||| | || | | ||||||||| | Sbjct 123823 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 123764 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || |||| ||| | | | ||||| |||| || || || | |||||||| Sbjct 123763 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TCAACCTCAAGGGTGATGGT 123708 Query 43151 TTTGCCCGT-TAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| || ||||| ||||| Sbjct 123707 CTTTCCGGTCAAGAGTCTTCACGAAGATCTGCAT 123674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| ||||| || | || |||||| |||||||||||||| ||| Sbjct 123444 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 123385 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 123384 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 123325 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||| ||||| ||| || ||| | ||| | | | ||||| |||| || Sbjct 123324 ATACCCTCTTTGTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCGGAGCTC---TC 123269 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||| || ||||| || || || | ||||| || ||||| ||||| Sbjct 123268 CACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| |||||||| | || |||||| || ||||||||||| ||| Sbjct 139782 CCTCCACGAAGACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCC 139723 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 139722 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 139663 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||| ||||| ||| || ||| | ||| | | | ||||| |||| || Sbjct 139662 ATACCCTCTTTGTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCAGAGCTC---TC 139607 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||| || ||||| || || || | ||||| || ||||| ||||| Sbjct 139606 CACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| ||||| | ||| || |||| || || ||||| || ||||| Sbjct 139291 CTCCTTCTGAATGTTGTAGTCAGCTAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAA 139232 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || |||||||| | || | | |||||| || ||| || |||| ||| Sbjct 139231 GATCAATCTTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTGA-CGT 139173 Query 43112 CGCC-ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | ||||| || || || ||||| || | Sbjct 139172 TGTCGATGGTGTCAGAGCTC---TCCACCTCAAGAGTGATAGTCTTTCCGGTTAGGGTTT 139116 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 139115 TGACGAAGATTTGCAT 139100 >seq3586 Length=17470 Score = 109 bits (120), Expect = 6e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||||||| | ||| ||||||||| || ||||| ||||| Sbjct 5763 CCACCTCTCAGACGAAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 5704 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||| || || || |||| |||||| || | || Sbjct 5703 AGTGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 5644 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||| || |||| | | | ||||| |||| || Sbjct 5643 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTC---TCG 5587 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||||||||| || || ||||| |||||||| ||||| Sbjct 5586 ACCTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||||||||| Sbjct 5956 CTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 5897 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||||| |||||||| | || | | ||||||||| ||| | || | |||| Sbjct 5896 GATGAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCC-TGAATCTTAGCCTTGACAT 5838 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | ||| ||||||||||| || || |||| Sbjct 5837 TATCGATAGTGTCTGAGCTC---TCGACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCT 5781 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 5780 TAACAAAGATCTGCAT 5765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||| || || ||||||||||||| |||||| | || || Sbjct 6429 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 6370 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || |||||||| ||||||| ||| ||||| | || | | ||||||||| || Sbjct 6369 AGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCC-TG 6311 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | | || | || | | | | ||||| |||| || || || | || || || Sbjct 6310 AATCTTAGCCTTAACATTATCAATTGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGT 6254 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | ||||| |||||||||||||| Sbjct 6253 CTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 6221 >seq863 Length=117140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || ||||| || |||| || ||||| || || ||||| Sbjct 77671 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAAA 77730 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||| | || | | ||||||||| ||| || ||||| | Sbjct 77731 ATCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTCGCTTTGACATTG 77790 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || || | |||||||| || |||||||| || || || Sbjct 77791 TCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACG 77850 Query 43173 AAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 77851 AAGATCTGCATCTTTGCG 77868 >seq2666 Length=20083 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||||||| | ||| | ||| | | || || ||||||||||| || Sbjct 9510 CCACCTCGAAGACGCAACACAAGATGAAGTGTTGACCCTTTCTGTATATTGTAATCCGCA 9569 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || ||||| |||||||| || |||| || ||||| | || Sbjct 9570 AGAGTACGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTTTGTTGGTCCGGAGGG 9629 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 || | | || || ||| ||| |||| | | || |||||| ||| || Sbjct 9630 ACTCCTGCTTTATCTTGGATCTTTATCTTGATGTTATCAACAGTGTCGGAGCTTTCAACT 9689 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | | ||||| ||||| || || ||||| || ||||||||||| Sbjct 9690 TCAAGAGCTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCAT 9736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571761776306800