Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq683 95.1 2e-14 seq1061 91.5 2e-13 seq3586 89.7 8e-13 seq778 87.8 3e-12 >seq683 Length=32930 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||||||||| || || ||||| || | ||||| ||||| || || ||||| Sbjct 24644 GTCCCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCA 24585 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| ||||||||||| |||||||| ||||| || || ||||| || Sbjct 24584 GCTAAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGT 24525 Query 146168 GGAATTCCTTCTTTATC 146184 || || || ||||| || Sbjct 24524 GGTATCCCCTCTTTGTC 24508 >seq1061 Length=128926 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||||||| || | || | ||| | |||||| ||||| || || ||||| Sbjct 82976 GTTCCACCTCTAAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCA 83035 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| || ||| || | ||| || |||||||| |||| ||||| ||||| || Sbjct 83036 GCTAGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCAGGT 83095 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || ||||| || || Sbjct 83096 GGTATACCCTCTTTGTCCTG 83115 >seq3586 Length=17470 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | || |||||||| || || ||||| | Sbjct 5535 CCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 5476 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| |||| |||||||| || || ||||| |||||||||||||||||| Sbjct 5475 AAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 5416 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 5415 ATGCCTTCCTTATCCTG 5399 >seq778 Length=67271 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 10431 CCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATT 10490 ||| ||||| ||| || ||| | ||||| ||||||| ||| ||| || | | || Sbjct 49727 CCTGAAGGAACTTACGCTAGAATCGCTCCGAGATCTGGTTTGGCTTGGAAACACTCGATC 49786 Query 10491 GATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTT 10550 ||| |||| ||||| || || || | ||||| |||||| ||| || || || || ||| Sbjct 49787 GATGTTGGTGCTGGTGTGATCGATGCTGATTACAGAGGACCTGTTGGTGTGATTTTGTTT 49846 Query 10551 AATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA-ATTAATATG 10609 ||||||||| ||| |||||| | | || |||||| |||| |||| ||| ||| Sbjct 49847 AATCATTCTGATGTTGATTTTGAAGTGAAGCTGGGAGATCGAATCGCTCAGCTTATTAT- 49905 Query 10610 TGAAAAAATT 10619 ||| || ||| Sbjct 49906 TGAGAAGATT 49915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743453813235200