Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq863 111 1e-19 seq3586 84.2 1e-11 seq516 84.2 1e-11 >seq863 Length=117140 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||| || | || ||| ||||| ||||||||||||| Sbjct 77634 TCCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGC 77693 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | ||| || || |||||||| | ||||||||||| || Sbjct 77694 GAGAGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGG 77753 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| ||| || ||||| | || | | || | || | || |||| Sbjct 77754 GATTCCCTCCTTGTCTTGGATC-TTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCGA 77812 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || | |||||||| || || || || |||||||| |||||||||||| Sbjct 77813 CCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 77862 >seq3586 Length=17470 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || || | || || | |||||| || ||||| Sbjct 5955 TCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAAG 5896 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| | |||||||| || | | |||||||| ||||| ||| | || Sbjct 5895 ATGAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACAT-- 5838 Query 34319 GCTATCGAATCGGTC---GAT-TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 |||||| ||| | | ||||| |||| ||| ||||||||||||||||| || || Sbjct 5837 --TATCGATAGTGTCTGAGCTCTCGACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCTT 5780 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 5779 AACAAAGATCTGCAT 5765 >seq516 Length=37039 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||| ||||| | || ||| || || ||||||||||| | Sbjct 9990 CCACCACGAAGACGCAGCACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCTGCA 10049 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | |||||| || || || ||||| | || ||||| | ||| Sbjct 10050 AGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 10109 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| |||||| ||||| || |||| | || | || || Sbjct 10110 ATCCCT-TCTTTGTCTTGAATCTTTGCCTTTACATTATCTATTGTGTCTGAGCTCTCAAC 10168 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||||||||| || || ||||||||||| |||||||| Sbjct 10169 CTCCAAAGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCAT 10216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323041248593600