Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq422 248 8e-61 seq144 127 2e-24 >seq422 Length=101449 Score = 248 bits (274), Expect = 8e-61 Identities = 581/865 (67%), Gaps = 14/865 (2%) Strand=Plus/Plus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| |||| ||||||||| ||||||||||| ||||| |||| Sbjct 43461 CATAACGGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTG 43520 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCC 16050 | ||||| ||||| ||||||| ||||| | || ||| ||| || | || Sbjct 43521 AAGCGAAATCAACTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCC 43580 Query 16051 CAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTT 16110 || |||||| | |||||| ||||| || ||||| || |||| ||||||| ||| Sbjct 43581 AGGCTCACCCAATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTT 43640 Query 16111 CATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGC 16170 ||| || | || ||| | || || | ||| | | | || || | |||||| Sbjct 43641 CATCCCAACCAACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGC 43700 Query 16171 TTCAATGATTATATCTCTTACTACACTAT-TTAACGGAGGGTTTAAT--AAGT-GTTTAA 16226 ||| || | || || | |||| || || || || || ||| ||| | || Sbjct 43701 ATCAC-GAACA-ATTGATTTC-ACACGATCTTCACTAAGC-TTGAATCGAAGAAGACTAT 43756 Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 | || | |||||| ||||||||||| | |||||||| || || | ||||| || | Sbjct 43757 AAATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGA 43816 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | ||||| || ||||||| |||||||| || | ||| || |||| ||| ||| | Sbjct 43817 AAGTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGG 43876 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 | ||||| ||||||||||| ||||| || || | ||| ||| || | || | | Sbjct 43877 AGAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGAT- 43935 Query 16407 tactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTA 16466 | || |||||||| | ||||| | |||||| | | ||||| ||| | || | Sbjct 43936 --CCGTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAA 43993 Query 16467 TTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAAC 16526 |||| || | || || | | |||||| ||||| ||||||||||| | || | || Sbjct 43994 TTGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGAC 44053 Query 16527 TATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTT 16586 ||||||| || || ||||||||||| || || || ||||| || |||||| | ||| | Sbjct 44054 TATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCT 44113 Query 16587 CGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 |||| || || || || || || | || || || || ||| || || || Sbjct 44114 CGGAGATCTGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTG 44173 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAG--TT 16703 || || || || || |||| |||||| || || | | ||||| || | ||| | Sbjct 44174 ATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAAT 44233 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 || |||||| | ||||| |||| |||||| ||||| | ||||| || ||||| Sbjct 44234 TTTCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTT 44293 Query 16764 CAGCCTTTTTATACATTTTCCATAT 16788 | || ||||| ||||| | |||||| Sbjct 44294 CGGCTTTTTTGTACATCTCCCATAT 44318 >seq144 Length=115930 Score = 127 bits (140), Expect = 2e-24 Identities = 377/578 (65%), Gaps = 5/578 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| ||||| || || || |||||||| | | || || ||||| || || || | | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| ||||||||||| |||| ||| || || | | || ||| || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAG 55978 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 ||||||||||| || || || || | ||| ||| || | ||| | | | || Sbjct 55977 ATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGAT---CCGTCG 55921 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | | ||||| | |||||| | || || ||| | || || || Sbjct 55920 ATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGG 55861 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | || || | | |||||| ||||| || || ||||| | || | ||||||||| Sbjct 55860 AAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACATC 55801 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATAT 16593 || |||||||||||||| || || ||||| || || || |||||| | || || || | Sbjct 55800 TCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCCGAGAC 55742 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| || || || || | | || | || || ||| || || || || || Sbjct 55741 TTGAACATCTGACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGC 55682 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 || || || || | |||||| || || | ||| || || || ||| || Sbjct 55681 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATC 55622 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 |||| ||||| |||||| ||||| | ||||| || || || | || || || Sbjct 55621 GCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTT 55562 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 |||||| | ||| || | | ||| ||| ||||||| Sbjct 55561 ATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 55524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462466847266000