Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1002 84.2 2e-11 >seq1002 Length=111223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| || || | || | Sbjct 95901 ATTATACTGGCCAAGGATTTGATCAGCTGTTAGATGTAATTAACAAGATCAAGAACAATC 95960 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || || ||||||| | | || |||||| || ||| | | ||||| Sbjct 95961 CTGATGATCGACGAATTATAATGTCAGCTTGGAACCCTCCTGATCTTAAGCTGATGGCAC 96020 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || || || ||||| ||| ||| | || |||||| Sbjct 96021 TTCCTCCATGCCACATGTT-TGCACAGTTCTATGTTGCGAATGGAGAACTTTCATGTCAA 96079 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || ||||||||||| || ||||| | || || ||||| Sbjct 96080 ATGTATCAGCGCTCAGCTGATATGGGTCTCGGTGTAACGTTTAACATTGC 96129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399146003920450