Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3586 129 5e-25 seq275 114 1e-20 seq308 96.9 3e-15 >seq3586 Length=17470 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||| || || ||| | || || Sbjct 6429 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 6370 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| || | | ||||||||| ||||| | || ||||||||| | Sbjct 6369 AGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 6310 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | |||| | ||| ||||||| |||||| |||||| Sbjct 6309 ATCTTAGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 6250 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 6249 CCTGTCAAAGTCTTCACAAAGATTTGCAT 6221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||| | |||||||| || || || ||||| |||||||| ||| | Sbjct 5535 CCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 5476 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || || |||||||||||||| ||||||| || || || ||||| Sbjct 5475 AAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 5416 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| ||| ||| |||||| | | | | || | ||| || Sbjct 5415 ATGCCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACA 5356 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| || || || ||||| || | |||||| Sbjct 5355 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| |||| | || || || || || || ||||| Sbjct 5956 CTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 5897 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | | || ||||| ||||| | || ||||||||| ||| || ||| || Sbjct 5896 GATGAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATT 5837 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||||| ||||| || ||||| || || ||||| || Sbjct 5836 ATCGATAGTGTCTGAGCTCTCGACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCTTAAC 5777 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 5776 AAAGATCTGCATG 5764 >seq275 Length=143682 Score = 114 bits (126), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||| || ||||||||||| || | |||| | || || Sbjct 123883 ACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 123824 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 123823 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 123764 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||| || ||||| Sbjct 123763 ATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTT 123704 Query 45308 CCCGTC-AGAGTCTTCACAAAGATTTGCAT 45336 || ||| ||||||||||| ||||| ||||| Sbjct 123703 CCGGTCAAGAGTCTTCACGAAGATCTGCAT 123674 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || ||||||||| ||||||||||| || || |||| Sbjct 139539 AAGACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCGTCC 139480 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| ||||||||||| ||||| | ||| ||||| || || | ||||||||||| Sbjct 139479 TCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT 139420 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | |||| |||| || | | | | |||| || ||||||||||| || || || Sbjct 139419 TGGA-TTTTAGCTTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGT 139361 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| ||||| || ||||||||||| Sbjct 139360 CTTTCCGGTCAAGGTCTTAACGAAGATTTGCAT 139328 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||||||| ||||| ||| || ||| | || Sbjct 123429 AAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCC 123370 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| ||||||| ||| ||||| || || | |||||| ||||| Sbjct 123369 TCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCT 123310 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | | || |||| || | | | | |||| | ||||||||| | |||||| || Sbjct 123309 TGGA-TCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATGGT 123251 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| ||||| || ||||| ||||| Sbjct 123250 CTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| ||| |||| | || || Sbjct 124111 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGACCATCCTCA 124052 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| || || ||||| | || ||||||||| Sbjct 124051 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGG 123992 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| | ||||||||||| || || ||||| Sbjct 123991 ATCTTGGCCTTAACATTATCAATGGTGTCTGAGCTCTCCACCTCCAGTGTGATGGTCTTT 123932 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| || || ||||| Sbjct 123931 CCGGTCAAAGTCTTCACGAAAATCTGCAT 123903 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || ||||||||| || ||||| ||| || ||| | || Sbjct 139767 AAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATCC 139708 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| ||||||| ||| ||||| || || | |||||| ||||| Sbjct 139707 TCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCT 139648 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | | || |||| || | | | | |||| | ||||||||| | |||||| || Sbjct 139647 TGGA-TCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGT 139589 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| ||||| || ||||| ||||| Sbjct 139588 CTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| || |||||||| || || |||| ||| Sbjct 139080 ACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCGTCCTCC 139021 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| || | || ||| || || ||||| | ||| ||||| ||| Sbjct 139020 AACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGG 138961 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| | |||||||| | ||| || ||||| Sbjct 138960 ATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTT 138901 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||| ||||| Sbjct 138900 CCGGTGAGAGTCTTAACGAAGATCTGCAT 138872 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | | | | || |||| || ||||| |||||||||| Sbjct 139291 CTCCTTCTGAATGTTGTAGTCAGCTAAAGTA-CGGCCGTCCTCGAGTTGCTTTCCGGCGA 139233 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | ||||| | || ||||| || || | ||||||||| || || || ||| || Sbjct 139232 AGATCAATCTTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACGT 139173 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | ||||||||| | || || ||||| || || || || || | Sbjct 139172 TGTCGATGGTGTCAGAGCTCTCCACCTCAAGAGTGATAGTCTTTCCGGTTAGGGTTTTGA 139113 Query 45324 CAAAGATTTGCAT 45336 | ||||||||||| Sbjct 139112 CGAAGATTTGCAT 139100 >seq308 Length=205501 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | ||||||||||| || ||||||||| |||||||| || Sbjct 130708 GCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 130767 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || ||||| || ||||| || | | ||||||||| ||||| Sbjct 130768 AAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGG 130827 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| |||||| ||| || | || ||||| | |||||| Sbjct 130828 GATCCCTTCCTTGTCTTGGATTTTTGTCTTCACATTGTCGACTGTGTCCGAGCTCTCCAC 130887 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || || ||||| ||||| || ||||| Sbjct 130888 TTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395037595014010