Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq422 167 2e-36 seq144 86.0 6e-12 >seq422 Length=101449 Score = 167 bits (184), Expect = 2e-36 Identities = 560/858 (65%), Gaps = 24/858 (3%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| |||| |||||| || |||||||| ||||||||||||| || || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||||||||| | ||| | |||| ||| | | || | || | Sbjct 43533 CTCCATCCAATCAAATGGATTACTC-ACACCATACACCTTACCGTACCCAGGCTCACCCA 43591 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||| | |||||| | || |||||||||||| ||| ||||||| ||||| || | | Sbjct 43592 ATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCA 43651 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | | ||| ||| | || || | || || | | || Sbjct 43652 ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAAT---CTCAACCGCATCACGAA 43708 Query 14151 TAATCG---TAATA--AT-TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAAC 14204 ||| | | | | || |||| || || || || ||| | || |||| |||| Sbjct 43709 CAATTGATTTCACACGATCTTCACTA--AGCTTGA-ATCGAAGAAGACTATAAATCAAAC 43765 Query 14205 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 14264 | || |||||||||||||| || || ||||| || |||||||| || || || | || Sbjct 43766 AAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTC 43825 Query 14265 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAAT 14323 | ||||| || |||||||| || ||||| || || | | | || | | ||||| ||||| Sbjct 43826 CAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAG-AACAAAAGCTACCGGAGAAGAAG 43884 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG-A 14382 || || ||||| |||||| || | | |||||| | ||| ||||| | || Sbjct 43885 ATACCTTCAACGCAAGCAAAAGCCACGATTCGTTC----AGCGAAGCTTTGAGATCCGTC 43940 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||||| | ||||||| | ||| || | | | || || |||||||| || Sbjct 43941 GATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCG 44000 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 || | ||| || ||||||| || | || || ||||| | ||| | |||||||| Sbjct 44001 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACAT 44060 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||||||| || || || || || || ||||| || ||||| | ||| || || Sbjct 44061 CTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGAT 44120 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || || || || |||| | | ||| || ||| || || || || || Sbjct 44121 CTGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGC 44180 Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCT---GAGTTTTTTCCA 14679 || || || | || || ||| || |||| | | || || | | | | |||| ||| Sbjct 44181 GAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCA 44240 Query 14680 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 ||| ||| | ||| ||||| ||||| || | ||||| || ||| | ||||| Sbjct 44241 GTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTT 44300 Query 14740 TTTATACATTACCCATAT 14757 ||| ||||| ||||||| Sbjct 44301 TTTGTACATCTCCCATAT 44318 >seq144 Length=115930 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 13896 TAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTAC 13955 |||| |||||| |||||| || |||| ||| | ||| || |||||||| ||||||| Sbjct 56405 TAGACATAACGGAAGCTTTTTGGTAATCACCAACACGTTTCTCGAAGAAGTTCGTTTTAC 56346 Query 13956 CTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCA 14014 | | || || ||| |||||| ||||||| ||||| || ||| |||| ||| | Sbjct 56345 CCTGAAGCGAGATAAGTTCCATCCAATCAAACGGATTAGTC-ACACCGTACACCTTACCG 56287 Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074 | || || | | | ||||||||||| ||||||||||| ||| ||| || ||| Sbjct 56286 TACCCAAGCGCACCCAAAAGTCTATCCGCAACAAACTCAATATACTGACTCATCAACTCA 56227 Query 14075 CAATTCATACC 14085 | ||||| || Sbjct 56226 CGGTTCATCCC 56216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482298511010800