Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2666 122 7e-23 seq308 111 1e-19 seq3586 96.9 3e-15 seq275 84.2 2e-11 >seq2666 Length=20083 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||||||||| ||||| ||||| ||||| || Sbjct 9282 CCACCACGAAGACGAAGCACAAGGTGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCA 9341 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || |||||| | ||| ||||| || |||||||||| ||||| || | | Sbjct 9342 AGAGTGTGACCATCTTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGG 9401 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || ||| ||| | |||||| | |||| |||||| | ||| | Sbjct 9402 ATCCCTTCTTTGTCGTGAATCTTGGCCTTGACATTGTCAACGGTGTCAGAGCTCTCAACT 9461 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| ||||||| || | ||||| |||||||| ||||| Sbjct 9462 TCTAGGGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCAT 9508 >seq308 Length=205501 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || | ||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | ||||| || ||| |||| ||||| ||||| ||| || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | |||| | | || |||| |||||| | ||| Sbjct 131285 ATTCCTTCCTTGTCTTGAATCT-TAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAAC 131343 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| ||| ||||||| || | ||||| ||||| |||||||| Sbjct 131344 TTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 >seq3586 Length=17470 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||||| || || || ||||| ||||||||||| || | ||| || ||| Sbjct 5749 AAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGTGTGCGACCATC 5690 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | || || || ||| |||||||||| || |||||| || | |||||||| || Sbjct 5689 CTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCCTTGTC 5630 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| ||||||| | |||| || | |||||| | Sbjct 5629 CTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCGACCTCCAAAGTGATGGT 5570 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| | || || ||||| || ||||| Sbjct 5569 TTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||||||||| || |||||||| ||||||| || | |||| Sbjct 5520 AGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCT 5461 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | ||||| |||||| || | |||||||||||| Sbjct 5460 TCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCTTATCC 5401 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | | ||| || | | | || ||| | |||| || | |||||| | Sbjct 5400 TGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACATCGAGAGTGATGGTC 5341 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || |||| |||||| Sbjct 5340 TTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 >seq275 Length=143682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | |||| ||||| ||||| || |||||||||||||| |||||| Sbjct 123672 CCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCC 123613 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || || || || |||| || | || || ||| || Sbjct 123612 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 123553 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | || ||||| | ||| ||||||| | |||| Sbjct 123552 ATACCTTCCTTATCCTGGATCT-TGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGAC 123494 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| | || ||||| | || || || || |||||||| Sbjct 123493 TTCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379307892378450