Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq144 273 2e-68 seq422 168 6e-37 seq1 116 3e-21 seq275 111 1e-19 seq863 104 2e-17 seq308 104 2e-17 seq3586 91.5 1e-13 >seq144 Length=115930 Score = 273 bits (302), Expect = 2e-68 Identities = 602/887 (68%), Gaps = 19/887 (2%) Strand=Plus/Plus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| |||||||||||| | || ||| | || ||| | ||||| || || || || Sbjct 55514 AGATTCTGT-ATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGCCGA 55572 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGA-GCGATTGGGATT 57654 ||||||||| ||||||| ||||||||| || || || | || | || |||||||||| Sbjct 55573 AGCATCGTTCTGGACCGCCGAAGAAGTCGATCTATCACAAGA-CGGACGCGATTGGGAGA 55631 Query 57655 CCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCG 57714 || || || ||| | | || || |||||||| | || || ||||||||||| | Sbjct 55632 ATCTAAACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCAG 55691 Query 57715 ATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGG 57774 | ||||| ||| |||||| | | | |||| ||| || ||||| |||||| Sbjct 55692 ACGGTATCGTTTTAGAGAATCTCGCTTCACGATTCATGTCAGATGTTCAAGTCTCGGAGG 55751 Query 57775 CGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || | |||||| |||||||| || | || ||||| || | ||||| || |||||| Sbjct 55752 CGCG-TGCTTTCTACGGATTCCAGATCGCGATTGAGAATATTCATTCCGAGATGTATAGT 55810 Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATC 57893 || || ||||||||||| | || || ||| | |||| | | || ||| |||||| Sbjct 55811 CTCCTTCTCGATACGTACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCGATT 55870 Query 57894 GAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGC 57952 ||||| || || ||| |||| ||||| ||| ||||| | || | ||||| | || Sbjct 55871 GAAACCATTCCTTGCG-TCGCGAAGAAAGCACAGTGGGCGATGACTTGGATCGA---CGG 55926 Query 57953 CACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC 58012 | || ||||| || | | | || ||||| ||| |||||||| ||||| || Sbjct 55927 ATCTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTC 55986 Query 58013 GGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGT 58071 || ||||| ||| | || || ||| | |||||||| || || ||||| || | || | Sbjct 55987 CGGTAGCTTCTGC-TCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGTTTAACCT 56045 Query 58072 TTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 | ||||| ||||| || || ||||| || | || ||||| || ||||| | | Sbjct 56046 TCTCTAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCTTGCCTCCTCT 56105 Query 58132 ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGG 58191 || | | | | | || | |||| ||| ||| | | || || ||| || | Sbjct 56106 ACACGCTCTTGAGGACGAAGCTGACGGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCG 56165 Query 58192 TCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACA 58251 ||| |||||| | |||||||| ||| || || || || || | || |||||| Sbjct 56166 TCGAGATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACC 56225 Query 58252 ATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTG 58311 ||| |||||| |||| |||||||||||||| || ||||||||| | | ||| Sbjct 56226 GTGAGTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGACTTTTG---GGTGCGCTTG 56282 Query 58312 GAGAGCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG 58368 | | || | ||| || ||||||||||||| ||| | || |||||||| Sbjct 56283 GGTACGGTAAGGTGTACGGTGTGACTAATCCGTTTGATTGGATGGAACTTATCTCGCTTC 56342 Query 58369 AGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 |||| || || ||||| ||||| ||| ||| | || || |||||| Sbjct 56343 AGGGTAAAACGAACTTCTTCGAGAAACGTGTTGGTGATTACCAAAAA 56389 >seq422 Length=101449 Score = 168 bits (186), Expect = 6e-37 Identities = 390/583 (67%), Gaps = 10/583 (2%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| || || ||||||| | || ||| | ||||||||||| || ||||| || || Sbjct 44342 ATGTTCCCAATCCAATATCCTCAGATATGGGAGATGTACAAAAAAGCCGAAGCTTCATTC 44283 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGG---ATTCCCTCAAA 57662 ||||||| ||||||||| || || ||| | ||| |||| |||| ||||| | || Sbjct 44282 TGGACCGCCGAAGAAGTCGATCTATCTCAAGATAATCGCGACTGGGAAAATTCCTTAAAC 44223 Query 57663 GAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 || || || | || || |||||||| | || || ||||||||||| || || || Sbjct 44222 GACGACGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCATCAGACGGCATC 44163 Query 57723 GTTAACGAGAATTTGGTCGA-AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 ||| |||||| | || | |||| || || || | | ||||| | Sbjct 44162 GTTTTAGAGAATCT-ATCAACCCGATTCATGTCCGATGTTCAGATCTCCGAGGCTCGTGC 44104 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 |||||||||||||||| | || ||||| || | || || || |||||| || || | Sbjct 44103 CTTTTACGGATTTCAAATCGCGATTGAGAATATTCACTCTGAGATGTATAGTCTCCTTCT 44044 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 |||||| || | || || ||| | |||| | | || ||| ||| || ||||| || Sbjct 44043 CGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATTGAAACCAT 43984 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGC-CACGGCCA 57960 || | | ||||| ||| | ||| | || |||||||| | | | || || Sbjct 43983 TCCTTGTGTAACGAAGAAAGCACAATGGGCGATGAAATGGATCGACGGATCTCAAAGC-- 43926 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 ||||| || | | | || || || ||| |||||||| ||||| || || |||| Sbjct 43925 --TTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCT 43868 Query 58021 TTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 || | || || ||| |||||||||| || | ||||| || || || || ||||| Sbjct 43867 TTTGTTCTATTTTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAACG 43808 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 | |||| || | ||||| ||||| ||| |||||| || || Sbjct 43807 AACTGATCTCAAGAGACGAAGGTCTTCATTGTGATTTCGCTTG 43765 >seq1 Length=111110 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || || ||||| ||| | || |||||| | Sbjct 60417 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATC 60476 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || || ||||||||||| | || || || Sbjct 60477 ATCGGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 60536 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || ||||| || || || |||||||| | ||| | |||||| Sbjct 60537 TCAGCAGCGTCTGATCTTCGCCGGGAAGCAACTGGAAGACGGAAGGACACTCGCCGATTA 60596 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || ||||| ||||| |||||| |||| || | ||||| || ||| Sbjct 60597 CAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGGT 60648 >seq275 Length=143682 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || || |||||| | || || || || Sbjct 123446 ATGCAAATATTCGTGAAGACTCTCACCGGGAAGACAATCACCCTTGAAGTCGAGAGCTCT 123505 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || ||| |||||||| | || || |||||| Sbjct 123506 GACACTATTGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGACCAG 123565 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || | || || |||||| ||| Sbjct 123566 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAAC 123625 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || || || |||||| |||| Sbjct 123626 ATTCAAAAGGAGTCAACCCTTCATTTGGT 123654 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCT-GACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||| || ||||| |||||||| ||| || || || |||||| | || ||||| || Sbjct 123674 ATGCAGATCTTCGTGAAGACTCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGAGCTC 123733 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||||||| | || || ||||| Sbjct 123734 TGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 123793 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| |||||| | || || | || || || || || Sbjct 123794 GCAGCGTCTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACATTGGCTGACTACAA 123853 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || |||||||| || |||| || || || | || |||| Sbjct 123854 CATCCAAAAGGAGTCGACTCTGCACTTGGTCCTCAGGCTCCGTGGTGGTA 123903 >seq863 Length=117140 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || || |||||| | || || || Sbjct 77866 CAAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGT 77807 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | |||||| || || |||||||| || | || || | Sbjct 77806 CCTCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAGGGAATCCCACCGG 77747 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | || ||||| || |||||| | |||||| ||| | ||| | Sbjct 77746 ACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGTACTCTCGCCGACT 77687 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || |||||||| ||||||||||| || Sbjct 77686 ACAACATCCAGAAGGAATCGACGCTTCATCTGGTGCT 77650 >seq308 Length=205501 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || || || || |||||||| || ||| | || ||||| || Sbjct 131392 CATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTC 131333 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| || || | || ||| | || ||||||||||| | || || ||||| Sbjct 131332 TGACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCA 131273 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| |||||| | || || | ||| | |||||| || Sbjct 131272 ACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAA 131213 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| || |||||| |||| ||| | ||||| || |||| Sbjct 131212 CATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGGTA 131163 >seq3586 Length=17470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||||||||| || || ||| | || ||||| || Sbjct 6221 ATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 6280 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||||||| | || || ||||| Sbjct 6281 GACACAATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 6340 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| |||||| | || || | |||| || ||||| ||| Sbjct 6341 CAGAGACTCATCTTCGCTGGAAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAAC 6400 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || ||||| || || |||| ||| Sbjct 6401 ATCCAGAAGGAGTCGACCCTGCACTTGGTTCTT 6433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445722882055200