Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1002 125 1e-23 seq422 87.8 4e-12 >seq1002 Length=111223 Score = 125 bits (138), Expect = 1e-23 Identities = 181/251 (72%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 ||||||||||| | || ||||||| || || || | || | | | |||| || Sbjct 95900 GATTATACTGGCCAAGGATTTGATCAGCTGTTAGATGTAATTAACAAGATCA-AGAACAA 95958 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| |||||| || | || || ||| | || ||||| ||| |||||| | || ||||| Sbjct 95959 TCCTGATGATCGACGAATTATAATGTCAGCTTGGAACCCTCCTGATCTTAAGCTGATGGC 96018 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 |||||||||||||||||| ||| || || ||||| || ||||||||| | || || || Sbjct 96019 ACTTCCTCCATGCCACATGTTTGCACAGTTCTATGTTGCGAATGGAGAACTTTCATGTCA 96078 Query 35644 GTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 |||||||||| ||| || ||| || | || || | || || ||||| |||||| Sbjct 96079 AATGTATCAGCGCTCAGCTGATATG--GGTCTCGGTGTAACGTTTAACATTGCCTCATAC 96136 Query 35702 TCTCTTCTGAC 35712 || ||||| || Sbjct 96137 TCCCTTCTTAC 96147 >seq422 Length=101449 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 101903 TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGT-GCATT 101961 || || |||| ||| || || |||||| |||||||| |||||||| ||| || || Sbjct 43925 TTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTT 43866 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 | || ||||||||| | ||||| | ||| | ||||||| || || | |||||| || Sbjct 43865 TGT-TCTATTTTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAACGA 43807 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063 | || || || ||||||||||||||| | || || || || Sbjct 43806 ACTGATCTCAAGAGACGAAGGTCTTCATTGTGATTTCGCTTG 43765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989484976658550