Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq422 167 2e-36 seq144 131 2e-25 seq1401 86.0 6e-12 seq330 82.4 7e-11 >seq422 Length=101449 Score = 167 bits (184), Expect = 2e-36 Identities = 575/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| |||| ||||| || | || || |||||||| ||||||| || || || | Sbjct 43474 TTCTGATACTCACCAACTC-TCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||| |||||| ||| | || || | | || ||| || Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAA 43592 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||| | ||| || || || || ||||| ||| ||| ||| || ||||| || | | Sbjct 43593 TAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAA 43652 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | |||| || | || |||||| | || || | |||||||||| | || Sbjct 43653 CGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAAT 43712 Query 11578 CGACGTTATAA---CTTC-CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633 || | | | |||| || || | || || || || | |||| | ||||| | Sbjct 43713 TGATTTCACACGATCTTCACTAAGCT--TGAATCGAAGAAGACTATAAA--TCAAACAAG 43768 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 | ||||||||||| | |||||||||||| || ||||| || || || || | ||| | Sbjct 43769 CGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAG 43828 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 |||| || |||||||| || | ||| || |||| | ||| ||| || ||||| || | Sbjct 43829 GCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATAC 43888 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT------A 11807 | || || ||||| || || | || ||| | | ||| || |||| | Sbjct 43889 CTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAG--CTT--TG--AGATCCGTCGA 43942 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 ||||||| | ||||| | |||||||| |||| || || ||||| || ||| | Sbjct 43943 TCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGA 44002 Query 11868 ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 | | ||| | | ||| | |||||| | | ||| ||||| | | | ||||||||| | Sbjct 44003 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 44062 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987 | || |||||||| || || || ||||||||||| || || || ||||| || || Sbjct 44063 CAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCT 44122 Query 11988 GTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 | ||||| |||| |||| | || |||||| || || || || | || Sbjct 44123 GAACATCGGACAT-GAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCG 44181 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC----TTTAGTTAATTTATCCCA 12102 || || || |||| ||||| || |||| | |||||| |||| ||||| ||||| Sbjct 44182 AAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTT-TCCCA 44240 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 || ||||| |||| ||| |||||||| ||||||| || || | | || Sbjct 44241 GTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTT 44300 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||| ||||| | ||| || | | |||| | || ||||| ||| Sbjct 44301 TTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATA 44343 >seq144 Length=115930 Score = 131 bits (144), Expect = 2e-25 Identities = 388/592 (66%), Gaps = 16/592 (3%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || || ||||| || ||||| |||||||||| | || | ||| ||||| || ||||| Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGA-ACCAGAAAAGAA 11748 || ||||| | ||||||||| || | ||| || || | |||| | | ||| || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGG-AGCAGAAGCTACCGGAGAAGAA 55979 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-- 11806 || || || || || || ||||| | || ||| | | ||| |||| Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGT----TTG--AGATCC 55925 Query 11807 ----ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 ||||| | | ||||| | |||||||| ||||| || ||||| || || Sbjct 55924 GTCGATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGC 55865 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | || | ||| | | ||| | |||||| | | || ||||| | | | |||||| Sbjct 55864 GCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATA 55805 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| || ||||||||||| || || || || || ||||| |||||| || ||||| || Sbjct 55804 CATCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGA 55745 Query 11983 ACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 || ||||| |||| |||| | || | |||||| || ||||| || | Sbjct 55744 GACTTGAACATCTGACAT-GAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATG 55686 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 || || || || || | ||||| || |||| ||| | | ||| || |||| Sbjct 55685 CGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCC 55626 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 |||| | |||| ||||| ||| |||||||| ||||||| || ||| | | || Sbjct 55625 AATCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 55566 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||||||| | |||||| | | || | ||| || || ||| ||| || Sbjct 55565 TCTTATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq1401 Length=32814 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| || || || | |||||||||||||| |||||||| | | Sbjct 17037 TTGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 16978 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| || || || |||||| | |||||| || | || Sbjct 16977 AGACATCAAATGGTAAGTTTTGATAGCAGATTCAATATCATCCTTGTGAATGCCAACAGC 16918 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| ||||| ||||| || ||||| Sbjct 16917 AACCCTCATCAGCATGTGTTGAGGCCTTTC 16888 >seq330 Length=201778 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||| | ||||||||||| || || | ||||||| |||||| |||||||| || Sbjct 18427 TTGAGCCCTTGGAGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTG 18368 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| || || ||| ||||| | ||| || || | ||| Sbjct 18367 AGACATTAAATGGTAAGTTTTGATAGCAGAATCAATATCTTCCTTGTGGATGCCAACAGA 18308 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 |||||||| ||||| ||||| || ||||| | | ||| || || |||||| || Sbjct 18307 AACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACT-TTTAAG-AGG 18250 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| | |||| ||||| | ||||| ||| ||| | |||| | ||| || Sbjct 18249 TATGATCTCTCTAGCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATA 18194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468479060266400