Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq422 214 2e-50 seq1401 95.1 2e-14 seq330 91.5 2e-13 >seq422 Length=101449 Score = 214 bits (236), Expect = 2e-50 Identities = 606/917 (66%), Gaps = 23/917 (3%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || ||||| || | || || || |||||||||||||||| | || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| |||||||| | ||| ||| | || | || ||| | Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAA 43592 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 36044 || | ||| || ||||| || |||||| |||||| |||| ||||| || | | Sbjct 43593 TAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAA 43652 Query 36045 -GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 36103 | || ||||| || | | ||| ||| ||||| ||||| || | | Sbjct 43653 CGCGCAA--GGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACA 43710 Query 36104 ATAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATG 36161 || ||| | || |||||||| | || || || || | |||| ||||||| | Sbjct 43711 ATTGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAA--TCAAACAAG 43768 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 ||||||| || || ||||| |||||||| || | ||||||||| || || ||||| | Sbjct 43769 CGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAG 43828 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATT 36280 |||||| || || || || | ||| || || || |||| | | || || ||||| || Sbjct 43829 GCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGAGAAGAAGATA 43887 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT--AT 36336 ||||| || ||||| || | | || || | | || || || || || Sbjct 43888 CCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA----GCTTTGAGATCCGTCGAT 43943 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| || ||||| | || ||||| |||||||||| || || || || || || Sbjct 43944 CCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAA 44003 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 ||||| | | | || || ||||||| | ||| ||||| | | ||||||||||| || Sbjct 44004 GAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTC 44063 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || ||||| || ||||| || |||||||||||||| || | |||||||| ||||| Sbjct 44064 AGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTG 44123 Query 36517 TACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 || || | ||| ||||| || || ||| || || || ||||| || || | Sbjct 44124 AACATC-GGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGA 44182 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAG--TTTATTCCAAT 36632 | || || | ||| ||||| || || | | ||||| | || | || || | ||| | Sbjct 44183 AGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGT 44242 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 | |||||| ||||| ||| |||||||| | ||||| ||||| || || || |||| Sbjct 44243 CGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTT 44302 Query 36693 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 | ||||| | ||| || | | ||||||| ||||| || ||| |||| || | || || Sbjct 44303 TGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGATCTGGAGTTG 44362 Query 36753 TTGCAAGGATTGGTTCC 36769 || || || |||||| Sbjct 44363 GTGTTAGAATCGGTTCC 44379 >seq1401 Length=32814 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | |||| ||| || | ||| | || | || |||||| | |||||| Sbjct 17342 TCCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACC 17283 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| || || ||||| || || || || |||||| |||||||||||||| || ||| Sbjct 17282 ATTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 17223 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 17222 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 17163 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 |||||| || |||||||| ||||| Sbjct 17162 GCCCTCAATGCTATCATCTTTCATG 17138 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 65546 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 ||| ||||| || ||||||| ||||| ||||||||||| |||||||| || | | | || Sbjct 18660 GAGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 18601 Query 65606 AGAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 || ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 18600 TGAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 >seq330 Length=201778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||| || | ||||||| || || || |||||| || ||| | || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | ||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||| ||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||||||||||| || | |||| ||| || || || || || || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATAGATGAT 18188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658108545880400