Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq275 114 1e-20 seq3586 95.1 1e-14 seq308 93.3 4e-14 seq683 87.8 2e-12 >seq275 Length=143682 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || |||| || ||||| ||||||||||| |||||| | Sbjct 123672 CCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCC 123613 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 123612 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 123553 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || ||| | | || | ||||| | | ||| || Sbjct 123552 ATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACT 123493 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| ||| | ||||| ||||| | || || ||||||||||||||| || Sbjct 123492 TCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCATACCT 123442 >seq3586 Length=17470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || ||||| || || ||||| ||||| | Sbjct 6447 CCACCACGAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 6388 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || ||||||||||| ||||| |||| || | || || || ||||| Sbjct 6387 AAAGTCCGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 6328 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | |||||| | | ||| || Sbjct 6327 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 6269 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 6268 CTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCATA 6220 >seq308 Length=205501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || || |||| || || ||||| || ||||| |||||| Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||||||||||||| |||| || | || || || ||||| Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | |||| | | || || ||||| | | ||| || Sbjct 131285 ATTCCTTCCTTGTC-TTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAAC 131343 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| || | ||||| || ||||||||||| Sbjct 131344 TTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 >seq683 Length=32930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/123 (77%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGA-- 139608 |||||| |||||||| ||||||||||| |||||||| ||||| ||| | | |||| Sbjct 24627 CAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCAGCTAA---AGTTCGACC 24571 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| | |||||||||||| | |||| | || ||||| || ||||| || ||||| Sbjct 24570 ATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGTGGTATCCCCTCTTT 24511 Query 139669 GTC 139671 ||| Sbjct 24510 GTC 24508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496015571752000