Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq422 269 4e-67 seq144 154 2e-32 seq1401 95.1 2e-14 seq330 95.1 2e-14 >seq422 Length=101449 Score = 269 bits (298), Expect = 4e-67 Identities = 617/915 (67%), Gaps = 19/915 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| || | || || || ||||||||||| |||| | || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||| ||||| | ||| ||| | || | || ||| | Sbjct 43533 CTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCCAGGCTCACCCAA 43592 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 49846 || | |||||| ||||| || |||||| |||||| |||| ||||| || | | Sbjct 43593 TAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAA 43652 Query 49847 -GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 49903 | || ||||| || |||| | ||| ||| ||||| |||||||| | Sbjct 43653 CGCGCAA--GGAAGCGCGTCGCAC--ACAAACTCTCTCTCAATCTCAACCGCATCACGAA 43708 Query 49904 TAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACA 49961 ||| ||| | || |||||||| | || || || || | |||| ||||||| Sbjct 43709 CAATTGATTTCACACGATCTTCACTAAGCTTGAATCGAAGAAGACTATAAA--TCAAACA 43766 Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 |||||||| || || ||||| |||||||| || ||||||||||| || || ||||| Sbjct 43767 AGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCC 43826 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGAT 50081 ||||||| || || || || | ||| || || || ||| || || |||||||| Sbjct 43827 AGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGAT 43886 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCC 50140 ||||| || ||||| || || | || || | | || | | | | | |||| Sbjct 43887 ACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATC-CGTCGATCC 43945 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | || ||||| | || ||||| |||||||||| || ||||| || || |||| Sbjct 43946 ATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGA 44005 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 ||| | | | || || ||||||| | ||||||||||| | ||||||||||| || | Sbjct 44006 GATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAG 44065 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 | ||||| || ||||| || || ||||||||||| || | |||||||| ||||| | Sbjct 44066 AGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAA 44125 Query 50321 CTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 | || | ||| ||||| | || ||| || || || ||||| || || || Sbjct 44126 CATC-GGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAG 44184 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTG-GGTGTTAG--TTTATTCCAATCA 50436 || || | ||| ||||| || || ||| ||||| | || | || || | ||| || Sbjct 44185 AAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTCG 44244 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 |||||| ||||| ||| |||||||| | ||||| ||||| || || || ||||| Sbjct 44245 CGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTTTG 44304 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 ||||| | ||| || | | |||||||||||||||| ||| |||| || |||| ||||| Sbjct 44305 TACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGATCTGGAGTTGGT 44364 Query 50557 GCAAGGATCGGTTCC 50571 | || ||||||||| Sbjct 44365 GTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 154 bits (170), Expect = 2e-32 Identities = 391/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||| | || ||||||| | || | |||||| || || || | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| || || || || |||||||| || ||||| ||| | | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTA 50137 ||| ||||| || || || || || | || || | | | | | | | | | Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATC-CGTCGA 55920 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | ||||| | || ||||| || ||||| || ||||| || || | Sbjct 55919 TCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGA 55860 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||||| | | | || || ||||||| | || ||||||| | ||||||||||| | Sbjct 55859 AGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACATCT 55800 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | |||||||| || ||||| || ||||| |||||||||||| | ||||| | | | Sbjct 55799 CGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTT 55740 Query 50318 GCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 | || |||| ||| |||||| ||| | ||| || || || ||||| || || Sbjct 55739 GAACATCTG-ACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGCG 55681 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 || || || | || ||||| || || || ||| | |||| || | |||||| Sbjct 55680 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCG 55621 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 |||| |||| ||| |||||||| | ||||| || ||||| || || || ||| Sbjct 55620 CGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTA 55561 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 ||||| | |||||| | | || || || || || ||| ||||| Sbjct 55560 TACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq1401 Length=32814 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | |||| ||| || | ||| | || | || |||||| | |||||| Sbjct 17342 TCCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACC 17283 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || || ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 17282 ATTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 17223 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 17222 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 17163 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 |||||| ||||||||||| ||||| Sbjct 17162 GCCCTCAATGCTATCATCTTTCATG 17138 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||| ||||| || ||||||| ||||| ||||||||||| |||||||| || | | | || Sbjct 18660 GAGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 18601 Query 79485 AGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 18600 TGAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 >seq330 Length=201778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | ||||||| || || || |||||| || ||||| || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||| ||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| || | |||| ||| || || || || || || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATAGATGAT 18188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718198679008400