Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq422 185 8e-42 seq144 86.0 6e-12 >seq422 Length=101449 Score = 185 bits (204), Expect = 8e-42 Identities = 564/858 (66%), Gaps = 24/858 (3%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| |||| |||||| || |||||||| ||||||||||||| || || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||||||||| | | ||| | |||| ||| | | || | || | Sbjct 43533 CTCCATCCAATCAAATGGATT-ACTCACACCATACACCTTACCGTACCCAGGCTCACCCA 43591 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| | ||| || | ||| |||||||||||| ||| ||||||| ||||| || | | Sbjct 43592 ATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCA 43651 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | | ||| ||| | || || | || || | | || Sbjct 43652 ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAAT---CTCAACCGCATCACGAA 43708 Query 13819 TAATTG---TAATA--ATCT-CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAAC 13872 ||||| | | | |||| || || || || || ||| | || |||| |||| Sbjct 43709 CAATTGATTTCACACGATCTTCACTA--AGCTTGA-ATCGAAGAAGACTATAAATCAAAC 43765 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | || |||||||||||||| || || ||||| || |||||||| || || || | || Sbjct 43766 AAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTC 43825 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| || |||||||| || ||||| || || | | ||| ||||| ||||| | Sbjct 43826 CAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGA 43885 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG-AT 14051 | || ||||| |||||| || | | |||||| | ||| ||||| | || Sbjct 43886 TACCTTCAACGCAAGCAAAAGCCACGATTCGTTC----AGCGAAGCTTTGAGATCCGTCG 43941 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||||| | ||||||| | ||| || | | | || || |||||||| || Sbjct 43942 ATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGG 44001 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | || || ||||||| || | || || ||||| | ||| | |||||||| Sbjct 44002 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 44061 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 |||||||| || || || || || || ||||| || |||||| | ||| || || Sbjct 44062 TCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATC 44121 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || || || || |||| | | ||| || ||| || || || || || Sbjct 44122 TGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCG 44181 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTTTTTTCCAA 14348 || || || | || || ||| || |||| | | || || | ||| | |||| ||| Sbjct 44182 AAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAG 44241 Query 14349 TCG-GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 ||| ||| ||| | ||| ||||| ||||| || | ||||| || ||| | ||||| Sbjct 44242 TCGCGAT-TATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTT 44300 Query 14408 TTTATACATTACCCATAT 14425 ||| ||||| ||||||| Sbjct 44301 TTTGTACATCTCCCATAT 44318 >seq144 Length=115930 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 13564 TAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTAC 13623 |||| |||||| |||||| || |||| ||| | ||| || |||||||| ||||||| Sbjct 56405 TAGACATAACGGAAGCTTTTTGGTAATCACCAACACGTTTCTCGAAGAAGTTCGTTTTAC 56346 Query 13624 CTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCA 13682 | | || || ||| |||||| ||||||| ||||| | | ||| |||| ||| | Sbjct 56345 CCTGAAGCGAGATAAGTTCCATCCAATCAAACGGATT-AGTCACACCGTACACCTTACCG 56287 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 | || || | | | |||||| |||| |||||||||||| ||| ||| || ||| Sbjct 56286 TACCCAAGCGCACCCAAAAGTCTATCCGCAACAAACTCAATATACTGACTCATCAACTCA 56227 Query 13743 CAATTCATACC 13753 | ||||| || Sbjct 56226 CGGTTCATCCC 56216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479681166554000