Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq422 163 3e-35 >seq422 Length=101449 Score = 163 bits (180), Expect = 3e-35 Identities = 554/853 (65%), Gaps = 14/853 (2%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| |||| |||||| || ||||| || ||||||||||||| || || || Sbjct 43473 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTGAAGCGAAATCAA 43532 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| |||||||| | ||| | |||| ||| | | || | || | Sbjct 43533 CTCCATCCAATCAAATGGATTACTC-ACACCATACACCTTACCGTACCCAGGCTCACCCA 43591 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 |||| | ||| || | ||| |||||||||||| ||| ||||||| ||||| || | | Sbjct 43592 ATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCA 43651 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | ||| ||| | || || || || || | || Sbjct 43652 ACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAA 43711 Query 13607 TAATCTTAATAATGTCATTAG-AAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 | || | | || | | ||| || || ||| | || |||| ||||| || Sbjct 43712 TTGATTTCACACGATCTTCACTAAGCTTGA-ATCGAAGAAGACTATAAATCAAACAAGCG 43770 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 |||||||||||||| || || ||||| || |||||||| || || || | ||| ||| Sbjct 43771 AAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGC 43830 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 13784 || || |||||||| || ||||| || || | | | || | | ||||| ||||| || || Sbjct 43831 ATTAAACCTCGTTTCTTCAACCAGAAAATAG-AACAAAAGCTACCGGAGAAGAAGATACC 43889 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG-ATATCC 13843 ||||| |||||| || | | |||||| | ||| ||||| | | |||| Sbjct 43890 TTCAACGCAAGCAAAAGCCACGATTCGTTC----AGCGAAGCTTTGAGATCCGTCGATCC 43945 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 |||| | ||||||| | ||| || | | | || || ||||| ||||| ||| | Sbjct 43946 ATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGA 44005 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 ||| || ||||||| || | || || ||||| | ||| | |||||||| |||| Sbjct 44006 GATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAG 44065 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 |||| || || || || || || ||||| || ||||| | ||| || || || | Sbjct 44066 AGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAA 44125 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 | || || |||| || | || || ||| || || || || || || | Sbjct 44126 CATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAGA 44185 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTTTTTTCCAATCGG 14140 | || | || || ||| || |||| | | || || | ||| | |||| ||| ||| Sbjct 44186 AGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTCGC 44245 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 ||| | ||| ||||| ||||| || | ||||| || ||| | |||||||| | Sbjct 44246 GATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTTTGT 44305 Query 14201 ACATTACCCATAT 14213 |||| ||||||| Sbjct 44306 ACATCTCCCATAT 44318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542077768400