Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq422 237 2e-57 seq144 154 2e-32 seq1401 93.3 6e-14 seq330 91.5 2e-13 >seq422 Length=101449 Score = 237 bits (262), Expect = 2e-57 Identities = 436/629 (69%), Gaps = 19/629 (3%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||||||| |||||||| || || ||||| || ||||| || | ||||||||| || Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || ||||| ||||||| || || || || | ||| || ||||| |||| | | || || Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGA 43877 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| ||||| || ||||| || | | || || | | || || Sbjct 43878 GAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA----GCTTTGAG 43933 Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||||| || ||||| | || ||||| |||||||||| || ||||| | Sbjct 43934 ATCCGTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAA 43993 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | || ||||||| | | | || || ||||||| | ||| ||||||| | |||| Sbjct 43994 TTGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGAC 44053 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 ||||||| || || ||||| || ||||| || || ||||||||||| || | |||| Sbjct 44054 TATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCT 44113 Query 42414 CGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||| | ||| || || | ||| ||||| | || ||| || || || ||||| Sbjct 44114 CGGAGATCTGAACATC-GGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCT 44172 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-----A 42527 || || || || || | ||| ||||| || || | | ||||| || ||| | Sbjct 44173 GATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGT-CGTCGTTTAAGGA 44231 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 |||| | ||| || |||||| ||||| ||| |||||||| | ||||| ||||| | Sbjct 44232 ATTT-TCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAG 44290 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 |||| || ||||| ||||| | ||| || | | ||||||| |||||||| ||| |||| Sbjct 44291 CTTCGGCTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATC 44350 Query 42648 TATTTGGATTTGGTGCAAGGATCGGTTCC 42676 || |||| |||||| || ||||||||| Sbjct 44351 GATCTGGAGTTGGTGTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 154 bits (170), Expect = 2e-32 Identities = 395/591 (67%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||| | || || |||| | || |||||||| || || || | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || || || |||||||| || || || ||| | | | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT 42241 ||| ||||| || || || || | | || || | | | || || || Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAA----GGTTTGAGATCCGT 55923 Query 42242 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | ||||| | || ||||| || ||||| || ||||| || || Sbjct 55922 CGATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGC 55863 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||||| | | | || || ||||||| | || ||||||| | |||||||||| Sbjct 55862 GGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACA 55803 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || |||||||| || ||||| || ||||| |||||||||||| | ||||| | | Sbjct 55802 TCTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGA 55743 Query 42420 CCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || || |||| ||| |||||| ||| | ||| || || || ||||| || Sbjct 55742 CTTGAACATCTG-ACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCG 55684 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG-TTAATTTATTCCA 42537 || || || || | || ||||| || || | ||| ||| | ||| || | ||| Sbjct 55683 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-ACCGTCGTTTAGATTCTCCCA 55625 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 ||| |||| |||| ||| |||||||| | ||||| || |||||||| || || Sbjct 55624 ATCGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 55565 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 |||||||| | |||||| | | || ||||| || || ||| ||||| Sbjct 55564 CTTATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq1401 Length=32814 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 71508 GAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATT 71567 ||| ||||| || ||||||| ||||| || |||||||| ||||||||||| | | | || Sbjct 18660 GAGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 18601 Query 71568 AGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 71624 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 18600 TGAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 >seq330 Length=201778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| | ||| || | ||||||| || || || |||||| || ||||| || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || ||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| || | |||| ||| || || || || || || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATCACGATCATAGATGAT 18188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671073680035600