Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq144 120 5e-22 >seq144 Length=115930 Score = 120 bits (132), Expect = 5e-22 Identities = 371/560 (66%), Gaps = 18/560 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| ||||| || || || | || || || ||||| | |||||| |||||||| Sbjct 55547 ATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGGACCGCCGAAGAAGTCGATCTA 55606 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||||||||||| || | | || ||| || | || || Sbjct 55607 TCACAAGACGGACGCGATTGGGAGAATC---TAAACGACGGTGAACGTCACTTCATCAAA 55663 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| |||| || || || ||||| || ||||| ||||| Sbjct 55664 CACGTCCTCGCTTTCTTCGCCGCATCAGACGGTATCGTTTTAGAGAATCTCGCTTCACGA 55723 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | ||| ||| | | || | |||| | |||||||| ||||||||||| ||| | Sbjct 55724 TTCATGTCAGATGTTCA--AGTCTCGGAGGCG-CGTGCTTTCTACGGATTCCAGATCGCG 55780 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 |||||||| | || || || ||||| | || | || | |||||| ||| Sbjct 55781 ATTGAGAATATTCATTCCGAGATGTATAGTCTCCTTCTCGATACGTACATCAAAGATAAC 55840 Query 125316 CAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || | | | ||| ||||| ||| || || || | || | | || || || Sbjct 55841 AAAGAGAGAGATCAT-CTCTTCCGCGCGATTGAAACCATTCCTTGCGTCGCGAAGAAAGC 55899 Query 125375 TCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || |||| ||| |||||||| | | ||| ||||| | || || | || | Sbjct 55900 ACAGTGGGCGATGACTTGGATCGACGGATCTCAAACCTTCG----CTGAACGAATCGTAG 55955 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTC 125492 | ||||| ||| || || |||||||| || ||||| || ||| ||||||| ||||| Sbjct 55956 CTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CCATCTTCTGGCTT 56014 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || ||||||||||| || | || | |||||| || || ||||||||||| Sbjct 56015 AAGAAACGAGGACTCATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCGAGACGAA 56074 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||| ||||||| || || || Sbjct 56075 GGCTTACACTGCGATTTCGC 56094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740986854095600