Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3586 102 6e-17 seq308 102 6e-17 seq1 96.9 3e-15 seq516 93.3 3e-14 seq2666 91.5 1e-13 seq683 89.7 4e-13 >seq3586 Length=17470 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||| | ||| || || ||||| || ||||| || |||||||||||| Sbjct 5535 CCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 5476 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||||| || ||| | ||||| | ||| || || ||| Sbjct 5475 AAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGAGGA 5416 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || ||| ||||| ||| ||| | || |||||||| | || || Sbjct 5415 ATGCCTTCCTTATCCTGAATCTTTGC-CTTAACATTGTCGATGGTATCAGAGCTCTCGAC 5357 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| | || ||||| || || || || ||||| || |||| |||||| Sbjct 5356 ATCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 >seq308 Length=205501 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || ||||||||||| || ||||| || |||||||||||| Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || || | ||||| ||||| | || | | |||||||| || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||| || ||| || ||| | || | ||| || | || || Sbjct 131285 ATTCCTTCCTTGTCTTGAATCTTAGCT-TTAACATTGTCAACGGTGTCAGAGCTCTCAAC 131343 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| |||||||||||| || || || ||||| ||||| |||||||| Sbjct 131344 TTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || | ||| ||||| || || || || ||||||||||| Sbjct 130937 CCACCACGGAGTCTCAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 130996 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||| ||| |||| | | |||||||| || Sbjct 130997 AGTGTGCGACCATCTTCGAGCTGCTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAG 131056 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||||||| | || | |||||| |||| || Sbjct 131057 ATCCCTTCCTTGTCTTGGATCTTGGCCTTTACATTGTCAACGGTATCTGAGCTTTCAACC 131116 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||| || || || || || || || |||||| Sbjct 131117 TCCAAAGTTATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCATA 131164 >seq1 Length=111110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || |||||||| || || ||||| || |||||||||||| Sbjct 60647 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCG 60588 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || ||||||| | ||| || || ||| | |||| ||| || || || ||| Sbjct 60587 AGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGG 60528 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| ||||| || || ||| ||| | || || || || | || ||| || Sbjct 60527 ATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTC-CGATGATTCAAC 60469 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||| ||| || || || || || || ||||| || || || ||||| ||| Sbjct 60468 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 60417 >seq516 Length=37039 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||||||||| ||| | | | ||||| | || Sbjct 10242 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCATCTTCGAGCTGC 10301 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| |||| | | ||||||||| ||| || ||||| ||||| || ||| Sbjct 10302 TTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTG 10361 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || |||||||| |||| || || || || ||||||||||| || Sbjct 10362 GCCTTCACATTGTCAATGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCGGTA 10421 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 10422 AGGGTCTTGACGAATATCTGCATA 10445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| |||||||| || ||| | | | || || | || Sbjct 10014 TGAAGTGTTGATTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGC 10073 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | || | | ||||||||| ||| || ||||||||||| ||| ||| Sbjct 10074 TTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATCTTT 10133 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||||||| | ||||| || || | || || || || || |||||||| || || Sbjct 10134 GC-CTTTACATTATCTATTGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTGCCAGT 10192 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||| Sbjct 10193 TAGGGTTTTCACAAAAATCTGCAT 10216 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || |||||||| ||||||||||| || ||| | | ||||| Sbjct 9779 AACAAGATGAAGAGTCGACTCTTTTTGGATGTTGTAATCCGCTAAAATGCGACCATCTTC 9838 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGT-CGTTTGGAATTCCTTCTTTGTCAC 15272 || || || || || | || | | || |||| || |||| || |||||||||||| Sbjct 9839 TAGCTGCTTCCCCGCAAAGATAAGCCTCTGCTGGTCCGGTTGG-ATCCCTTCTTTGTCAT 9897 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||||| ||| ||| | || | ||||| | | || || || | | ||||| Sbjct 9898 GAATCTTTGC-CTTGACATTGTCAACCGTATCAGAACTCTCGACCTCAAGAATGATGGTC 9956 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| ||| || |||||||| ||||| Sbjct 9957 TTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 9988 >seq2666 Length=20083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||| || || ||| | | ||||| | ||| Sbjct 9306 TGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTCAAGTTGC 9365 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTC-GTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | || | | |||||||| | ||||| | ||||||||||| ||| || Sbjct 9366 TTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGA-TCCCTTCTTTGTCGTGAATCTT 9424 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || | ||| || | || || |||| ||| |||||||| || || Sbjct 9425 GGCCTTGACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGGTTTTGCCAGT 9484 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||| Sbjct 9485 TAGGGTTTTCACAAAAATCTGCAT 9508 >seq683 Length=32930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || ||||| || |||| || || ||||| || ||||||||||| | Sbjct 24641 CCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCAGCT 24582 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | |||||||||||||| ||||| ||||||| | ||||| || ||| Sbjct 24581 AAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGTGGT 24522 Query 15257 ATTCCTTCTTTGTC 15270 || || |||||||| Sbjct 24521 ATCCCCTCTTTGTC 24508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362144726199210