Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq308 87.8 1e-12 seq275 86.0 5e-12 >seq308 Length=205501 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || |||||||| || || |||||||| || | ||| | ||||| Sbjct 130727 ACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGACCATCCTCA 130786 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| || | || |||||||| || ||| || | || || ||||| Sbjct 130787 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTGG 130846 Query 18953 ATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 ||||| ||| || || | | |||| || || | || |||| ||| | || ||||||| Sbjct 130847 ATTTT-TGTCTTCACATTGTCGACTGTGTC-CGAGCTCTCCACTTCCAAAGTTATGGTTT 130904 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || || |||||||| ||||| Sbjct 130905 TTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 >seq275 Length=143682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || |||||||| |||||||||||||| |||| || | ||| Sbjct 123429 AAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCC 123370 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || | |||||||| ||| || | ||||||||||| Sbjct 123369 TCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCT 123310 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || ||| || | | | | || ||| |||| |||| ||||||||| Sbjct 123309 TGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATGGTC 123250 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || ||||| || || ||||| Sbjct 123249 TTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414533339147140