Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 9e-14 seq275 82.4 5e-11 >seq1 Length=111110 Score = 91.5 bits (100), Expect = 9e-14 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| | || | ||||||||| | ||||||||||| || || |||||||| | Sbjct 60649 CACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGG 60590 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | ||| |||| |||||| || || || | ||| ||||| |||| | Sbjct 60589 CGAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTG 60530 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | || ||||| || || | | ||||| || || | | || ||||| | || Sbjct 60529 GGATTCCTTCCTTGTCTTGGATCTTCGCC---TTCACATTGTCGATTGTGTCCGATGATT 60473 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGG 33377 ||| || || |||||||| || ||||| || ||||| ||||| || ||||| ||| | | Sbjct 60472 CAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTTTG 60413 Query 33378 TT 33379 || Sbjct 60412 TT 60411 >seq275 Length=143682 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||| | || ||||| ||||| || |||||||| | ||| || | Sbjct 123660 CGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCCAAGGTGCGACCA 123601 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || | ||| |||||||||| || || ||||| || Sbjct 123600 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTA 123541 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| ||||| | | || || || || || Sbjct 123540 TCCTGGATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATT 123481 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || ||||| |||||||| Sbjct 123480 GTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318747257353380