Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq308 95.1 1e-14 seq683 89.7 4e-13 seq2666 86.0 5e-12 >seq308 Length=205501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || |||||||| || |||||||||||| | | ||| | ||| || Sbjct 131182 CACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCAAGAGTGCGACCATCCTC 131241 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||| || ||| | || || |||||||| || || | ||||| ||||| Sbjct 131242 AAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTCTTG 131301 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | |||| | || || | || ||| | ||||||||||| Sbjct 131302 AATCTTAGCTTTAACATTGTCAACGGTGTC-AGAGCTCTCAACTTCTAGGGTAATGGTTT 131360 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || | ||||| ||||| |||||||| Sbjct 131361 TGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 >seq683 Length=32930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| | |||||| ||||| || | |||||| ||||| || ||||||||||| | Sbjct 24641 CCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCAGCT 24582 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| |||||||| || ||| | || | |||||||||||| || Sbjct 24581 AAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGTGGT 24522 Query 20102 ACGCCTTCTTTGTC 20115 | || |||||||| Sbjct 24521 ATCCCCTCTTTGTC 24508 >seq2666 Length=20083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| ||||| ||||| || || | | ||| | | |||||| | ||| Sbjct 9306 TGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTCAAGTTGC 9365 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| || | ||||| |||||||| || | | | |||||||||||| ||| || Sbjct 9366 TTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTCGTGAATCTTG 9425 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | | |||| | || || | || ||| | ||| ||||||||||| || Sbjct 9426 GCCTTGACATTGTCAACGGTGTC-AGAGCTCTCAACTTCTAGGGTTATGGTTTTGCCAGT 9484 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||| |||||||| ||||| Sbjct 9485 TAGGGTTTTCACAAAAATCTGCAT 9508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419547261854610