Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq422 150 2e-31 >seq422 Length=101449 Score = 150 bits (166), Expect = 2e-31 Identities = 554/863 (64%), Gaps = 10/863 (1%) Strand=Plus/Plus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 |||||| || ||| ||||| || | |||||| || ||||| || || ||||| |||| Sbjct 43461 CATAACGGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTTTTACCTTG 43520 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCC 12966 | |||||| ||||| |||| || ||||| || || ||| || |||| Sbjct 43521 AAGCGAAATCAACTCCATCCAATCAAATGGATTACTCACACCATACACCTTACCGTACCC 43580 Query 12967 TAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTT 13026 || || || | || || ||||| || || || || |||| ||||||| ||| Sbjct 43581 AGGCTCACCCAATAACCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTT 43640 Query 13027 CATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGC 13086 ||| || | || ||| | || || | ||| | | | || || ||||| || Sbjct 43641 CATCCCAACCAACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGC 43700 Query 13087 TTCGATAACTATG--TCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAAC 13144 || ||| || | || | | ||| |||| | || | || ||| | || | Sbjct 43701 ATCACGAACAATTGATTTCACACGATCTTCACTAA-GCTTGAATCGA-AGAAGACTATAA 43758 Query 13145 ATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204 |||| ||| || |||||||| || | ||||| ||||| || || ||||| || || Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818 Query 13205 GTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaa 13264 || || || ||||| | |||||||| || | ||| || |||| | ||| ||| || Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAG 43878 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324 || || || |||||||| ||||| || | | | |||| | | | | | Sbjct 43879 AAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGAT--- 43935 Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATT 13384 | || ||||| || | ||||| | |||||| | | || || || |||| ||| Sbjct 43936 CCGTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATT 43995 Query 13385 GCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA 13444 ||| || | || || | | || || | ||| ||||||||||| | | | ||| Sbjct 43996 GCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTA 44055 Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504 ||||| || || |||||||| || ||||| ||||| || || ||||| | |||||| Sbjct 44056 TACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCG 44115 Query 13505 GATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564 || | |||||| ||||| |||| || || || || ||| || ||||| Sbjct 44116 GAGATCTGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGAT 44175 Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC---TGACAACTTT 13621 || || || || || |||| ||| || || || | | ||||| || | | | ||| Sbjct 44176 GCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTT 44235 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 ||| || || ||||| |||| ||| || || || ||||||| || ||||| | Sbjct 44236 TCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCG 44295 Query 13682 GCCTTCTTATACATCATCCATAT 13704 || || || |||||| |||||| Sbjct 44296 GCTTTTTTGTACATCTCCCATAT 44318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430941377209620