Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3586 104 2e-17 seq275 96.9 3e-15 seq1 86.0 5e-12 >seq3586 Length=17470 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| ||| ||||||||| |||||||| ||||| | | || | ||||| Sbjct 5745 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGTGTGCGACCATCCTCA 5686 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||||||| | | || | | |||||||||| || | || |||||||||| Sbjct 5685 AGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGG 5626 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | || || || | ||| ||| | || |||||||| Sbjct 5625 ATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTTTTG 5566 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 |||||||| || || ||||| |||||||| | |||| |||| |||| Sbjct 5565 CCGGTGAGGGTCTTGACAAAGATCTGCATACCACCTCTTAATCGGAGAA 5517 >seq275 Length=143682 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || |||||| || |||||||| ||||| || ||| || | ||||| Sbjct 124111 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC-AAGTGTGCGACCATCCTC 124053 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | ||||||||||||| || | | |||||||||| Sbjct 124052 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTG 123993 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | ||||| || | |||| ||| | ||| ||||| || Sbjct 123992 GATCTTGGCCTTAACATTATCAATGGTGTCTGAGCTCTCCACCTCCAGTGTGATGGTCTT 123933 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | ||| ||||| ||||||||||| Sbjct 123932 TCCGGTCAAAGTCTTCACGAAAATCTGCAT 123903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||||| |||||||| || ||||||||||||||||||||| || Sbjct 123673 ACCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGC 123614 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| || || | || | ||||||||| ||| || Sbjct 123613 CAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 123554 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | || |||||| ||| || || ||| | |||| | || || || | || || Sbjct 123553 AATACCTTCCTTATCCTGGATCTT-GGCT---TTGACGTTGTCAATAGTGTCAG-AG-CT 123500 Query 48675 C-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | || | || || || || ||||||||||| ||||| || || ||||| Sbjct 123499 CTCGACTTCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || || || ||| ||||| || || ||||| ||||| Sbjct 139099 ACCACCACGAAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGC 139040 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||||| |||||| ||| || | || | | |||||||||| || Sbjct 139039 CAAAGTACGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 138980 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||| ||| || || ||| | | | || ||||| || | ||| Sbjct 138979 AATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTTTCC 138922 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||| || || || ||||||||| Sbjct 138921 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 138871 >seq1 Length=111110 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | || | | ||| |||||||| || ||| || || ||||||||||| || Sbjct 60648 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 60589 Query 48559 CAATTGTCGCTC-GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | ||| || ||| ||||| ||||| ||| || | || | ||||||||||||| | Sbjct 60588 GAGT-GTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTG 60530 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || ||| ||| | | | || || || | || || Sbjct 60529 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGATTCAA 60470 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || || |||||||| || |||||||| Sbjct 60469 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 60421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421211103467810