Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq243 116 2e-21 seq901 114 7e-21 seq456 114 7e-21 seq261 113 2e-20 seq2007 111 8e-20 seq1178 111 8e-20 seq124 111 8e-20 seq427 109 3e-19 seq385 109 3e-19 seq1537 104 1e-17 seq3855 102 4e-17 seq1879 102 4e-17 seq91 102 4e-17 seq2763 100 1e-16 seq369 100 1e-16 >seq243 Length=218209 Score = 116 bits (128), Expect = 2e-21 Identities = 83/94 (88%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11438 ATTAATAAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 || |||||||| | ||||| |||||||| | | |||||||| |||||||||||||||| Sbjct 20659 ATCAATAAAAATAAACAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATT 20717 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 20718 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 20751 >seq901 Length=94959 Score = 114 bits (126), Expect = 7e-21 Identities = 83/96 (86%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || ||| ||| |||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 72860 AAAAAACAATTAAATAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 72801 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||||||||| |||||||||||||||||||| ||| Sbjct 72800 CACGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 72765 >seq456 Length=122271 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 35814 AAAAAA--AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 35757 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 35756 GCTCTAACCAACTGAGCTAATGGGCC 35731 >seq261 Length=154179 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 69693 AAAAAGCAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 69750 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 69751 CTCTAACCAACTGAGCTAATGGGCC 69775 >seq2007 Length=35098 Score = 111 bits (122), Expect = 8e-20 Identities = 82/96 (85%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATC---AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| |||| ||||| | | ||||||||| | | |||||||| |||||||||||||| Sbjct 29923 AATAAATACAAAATTTTAAGAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 29982 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 29983 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 30018 >seq1178 Length=98205 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 61520 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 61579 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 61580 CAACTGAGCTAATGGGCC 61597 >seq124 Length=243021 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 72600 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 72541 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 72540 CAACTGAGCTAATGGGCC 72523 >seq427 Length=232189 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8900 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8959 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 8960 TGAGCTAATGGGCC 8973 >seq385 Length=86365 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 28074 AAATTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 28133 Query 11512 CAACTGAGCTAATGGGCCGTCGAC 11535 ||||||||||||| |||| | ||| Sbjct 28134 CAACTGAGCTAATAGGCCTTTGAC 28157 >seq1537 Length=56562 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 42389 AAAAA--AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 42446 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 42447 CTCTAACCAACTGAGCTAATAGGCC 42471 >seq3855 Length=16389 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| ||||| || | ||||||||||| |||||||||||||||||||| Sbjct 10356 AAAAAATAAAAAGAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 10297 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 10296 GACGCTCTAACCAACTGAGCTAATAGGCC 10268 >seq1879 Length=37835 Score = 102 bits (112), Expect = 4e-17 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 2201 AAAAAAAAGAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 2260 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 2261 CTCTAACCAACTGAGCTAATAGGCC 2285 >seq91 Length=146988 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 15543 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 15484 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 15483 CAACTGAGCTAATAGGCC 15466 >seq2763 Length=13043 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 567 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 626 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 627 TGAGCTAATAGGCC 640 >seq369 Length=125495 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 92765 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 92706 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 92705 TGAGCTAATAGGCC 92692 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261466310123560